Wolfgang Gerlach

18 papers A 1B 1Journal 8Unranked 7
YearRankTypeTitle / Venue / Authors
2019 J jnl
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.
Briefings Bioinform.
Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke
2019 J jnl
The MG-RAST API explorer: an on-ramp for RESTful query composition.
BMC Bioinform.
Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
2018 — conf
On the way to research objects for environmental genomics (or metagenomics).
RO
Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke
2017 A conf
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads.
Middleware
Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji
2016 — conf
A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST.
SIGSIM-PADS
Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer
2016 J jnl
The MG-RAST metagenomics database and portal in 2015.
Nucleic Acids Res.
Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer
2015 J jnl
A RESTful API for Accessing Microbial Community Data for MG-RAST.
PLoS Comput. Biol.
Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
2015 B conf
Container Orchestration for Scientific Workflows.
IC2E
Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer
2015 — conf
Shock: Active Storage for Multicloud Streaming Data Analysis.
BDC
Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer
2014 — conf
Skyport: container-based execution environment management for multi-cloud scientific workflows.
DataCloud@SC
Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer
2014 — conf
Workload characterization for MG-RAST metagenomic data analytics service in the cloud.
IEEE BigData
Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
2013 — conf
A scalable data analysis platform for metagenomics.
IEEE BigData
Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer
2012 — —
Taxonomic classification of metagenomic sequences.
Wolfgang Gerlach
2009 J jnl
Engineering a compressed suffix tree implementation.
ACM J. Exp. Algorithmics
Niko Välimäki, Veli Mäkinen, Wolfgang Gerlach, Kashyap Dixit
2009 J jnl
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
BMC Bioinform.
Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye
2007 J jnl
Compressed suffix tree - a basis for genome-scale sequence analysis.
Bioinform.
Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen
2007 — conf
Engineering a Compressed Suffix Tree Implementation.
WEA
Niko Välimäki, Wolfgang Gerlach, Kashyap Dixit, Veli Mäkinen
2006 J jnl
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
Bioinform.
Wolfgang Gerlach, Robert Giegerich