Witold Dyrka

18 papers B 1Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Harnessing deep learning for proteome-scale detection of amyloid signaling motifs.
Bioinform.
Krzysztof Pysz, Jakub Galazka, Witold Dyrka
2022 J jnl
Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins.
PLoS Comput. Biol.
Jakub Wojciechowski, Emirhan Tekoglu, Marlena Gasior-Glogowska, Virginie Coustou, Natalia Szulc, Monika Szefczyk, Marta Kopaczynska, Sven J. Saupe, Witold Dyrka
2021 J jnl
Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars.
BMC Bioinform.
Witold Dyrka, Marlena Gasior-Glogowska, Monika Szefczyk, Natalia Szulc
2020 B conf
Unsupervised Grammar Induction for Revealing the Internal Structure of Protein Sequence Motifs.
AIME
Olgierd Unold, Mateusz Gabor, Witold Dyrka
2019 — ed.
Proceedings of the 14th International Conference on Grammatical Inference, ICGI 2018, Wrocław, Poland, September 5-7, 2018
ICGI
Olgierd Unold, Witold Dyrka, Wojciech Wieczorek
2018 J jnl
Estimating probabilistic context-free grammars for proteins using contact map constraints.
CoRR
Witold Dyrka, François Coste, Juliette Talibart
2018 — conf
How to measure the topological quality of protein parse trees?
ICGI
Mateusz Pyzik, François Coste, Witold Dyrka
2018 — conf
International Conference on Grammatical Inference 2018: Preface.
ICGI
Olgierd Unold, Witold Dyrka, Wojciech Wieczorek
2018 J jnl
The first MICCAI challenge on PET tumor segmentation.
Medical Image Anal.
Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, Laquan Li, Wei Lu, Vincent Jaouen, Clovis Tauber, Jakub Czakon, Filip Drapejkowski, Witold Dyrka, Sorina Camarasu-Pop, Frédéric Cervenansky, Pascal Girard, Tristan Glatard, Michaël Kain, Yao Yao, Christian Barillot, Assen Kirov, Dimitris Visvikis
2017 J jnl
Quantiprot - a Python package for quantitative analysis of protein sequences.
BMC Bioinform.
Bogumil Konopka, Marta Marciniak, Witold Dyrka
2016 J jnl
How to measure the topological quality of protein grammars?
CoRR
Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek
2016 J jnl
Machine learning methods for accurate delineation of tumors in PET images.
CoRR
Jakub Czakon, Filip Drapejkowski, Grzegorz Zurek, Piotr Giedziun, Jacek Zebrowski, Witold Dyrka
2013 J jnl
Probabilistic grammatical model for helix-helix contact site classification.
Algorithms Mol. Biol.
Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
2010 — conf
Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence.
PRIB
Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
2009 J jnl
A stochastic context free grammar based framework for analysis of protein sequences.
BMC Bioinform.
Witold Dyrka, Jean-Christophe Nebel
2009 — conf
Accuracy in Predicting Secondary Structure of Ionic Channels.
ICCCI (SCI Volume)
Bogumil Konopka, Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
2008 J jnl
Ion flux through membrane channels - An enhanced algorithm for the Poisson-Nernst-Planck model.
J. Comput. Chem.
Witold Dyrka, Andy T. Augousti, Malgorzata Kotulska
2007 J jnl
A probabilistic context-free grammar for the detection of binding sites from a protein sequence.
BMC Syst. Biol.
Witold Dyrka, Jean-Christophe Nebel