Wing-Kin Sung - RankMe

226 papers A* 8A 6B 40C 20Misc 6Journal 118Unranked 20

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Finding the cyclic covers of a string. Inf. Process. Lett. Roberto Grossi, Costas S. Iliopoulos, Jesper Jansson, Zara Lim, Wing-Kin Sung, Wiktor Zuba
2025	J	`jnl`	UniVar: A variant interpretation platform enhancing rare disease diagnosis through robust filtering and unified analysis of SNV, INDEL, CNV and SV. Comput. Biol. Medicine Cherie C. Y. Au-Yeung, Yuen-Ting Cheung, Joshua Y. T. Cheng, Ken W. H. Ip, Sau-Dan Lee, Victor Y. T. Yang, Amy Y. T. Lau, Chit K. C. Lee, Peter K. H. Chong, King Wai Lau, Jurgen T. J. van Lunenburg, Damon F. D. Zheng, Brian H. M. Ho, Crystal Tik, Kingsley K. K. Ho, Ramesh Rajaby, Chun-Hang Au, Mullin H. C. Yu, Wing-Kin Sung
2024	C	`ed.`	24th International Workshop on Algorithms in Bioinformatics, WABI 2024, Royal Holloway, London, United Kingdom, September 2-4, 2024 WABI Solon P. Pissis, Wing-Kin Sung
2024	A	`conf`	A Faster Algorithm for Constructing the Frequency Difference Consensus Tree. STACS Jesper Jansson, Wing-Kin Sung, Seyed Ali Tabatabaee, Yutong Yang
2023	J	`jnl`	Distribution based MIL pooling filters: Experiments on a lymph node metastases dataset. Medical Image Anal. Mustafa Umit Oner, Jared Marc Song Kye-Jet, Hwee Kuan Lee, Wing-Kin Sung
2023	B	`conf`	Finding the Cyclic Covers of a String. WALCOM Roberto Grossi, Costas S. Iliopoulos, Jesper Jansson, Zara Lim, Wing-Kin Sung, Wiktor Zuba
2023	B	`conf`	MUL-Tree Pruning for Consistency and Compatibility. CPM Christopher Hampson, Daniel J. Harvey, Costas S. Iliopoulos, Jesper Jansson, Zara Lim, Wing-Kin Sung
2023	J	`jnl`	SVsearcher: A more accurate structural variation detection method in long read data. Comput. Biol. Medicine Yan Zheng, Xuequn Shang, Wing-Kin Sung
2022	J	`jnl`	ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms. Nucleic Acids Res. Qiangwei Zhou, Pengpeng Guan, Zhixian Zhu, Sheng Cheng, Cong Zhou, Huanhuan Wang, Qian Xu, Wing-Kin Sung, Guoliang Li
2022	J	`jnl`	An AI-assisted tool for efficient prostate cancer diagnosis in low-grade and low-volume cases. Patterns Mustafa Umit Oner, Mei Ying Ng, Danilo Medina Giron, Cecilia Ee Chen Xi, Louis Ang Yuan Xiang, Malay Singh, Weimiao Yu, Wing-Kin Sung, Chin Fong Wong, Hwee Kuan Lee
2022	J	`jnl`	Obtaining spatially resolved tumor purity maps using deep multiple instance learning in a pan-cancer study. Patterns Mustafa Umit Oner, Jianbin Chen, Egor Revkov, Anne James, Seow Ye Heng, Arife Neslihan Kaya, Jacob Josiah Santiago Alvarez, Angela Takano, Xin Min Cheng, Tony Kiat Hon Lim, Daniel Shao-Weng Tan, Weiwei Zhai, Anders Jacobsen Skanderup, Wing-Kin Sung, Hwee Kuan Lee
2022	J	`jnl`	Oner, Sung, and Lee: Researchers in digital pathology for the future of modern medicine. Patterns Mustafa Umit Oner, Wing-Kin Sung, Hwee Kuan Lee
2021	J	`jnl`	A linear time algorithm for the Theor. Comput. Sci. Anik Sarker, Wing-Kin Sung, M. Sohel Rahman
2021	J	`jnl`	Computing the Rooted Triplet Distance Between Phylogenetic Networks. Algorithmica Jesper Jansson, Konstantinos Mampentzidis, Ramesh Rajaby, Wing-Kin Sung
2021	J	`jnl`	Guest editors' foreword. J. Graph Algorithms Appl. M. Sohel Rahman, Kunihiko Sadakane, Wing-Kin Sung
2021	J	`jnl`	HIVID2: an accurate tool to detect virus integrations in the host genome. Bioinform. Xi Zeng, Linghao Zhao, Chenhang Shen, Yi Zhou, Guoliang Li, Wing-Kin Sung
2021	J	`jnl`	SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing. Bioinform. Ramesh Rajaby, Wing-Kin Sung
2020	J	`jnl`	Efficient Identification of k-Closed Strings. Int. J. Found. Comput. Sci. Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Wing-Kin Sung, Steven Watts
2020	J	`jnl`	Faster algorithms for 1-mappability of a sequence. Theor. Comput. Sci. Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2020	J	`jnl`	MethHaplo: combining allele-specific DNA methylation and SNPs for haplotype region identification. BMC Bioinform. Qiangwei Zhou, Ze Wang, Jing Li, Wing-Kin Sung, Guoliang Li
2020	J	`jnl`	Studying The Effect of MIL Pooling Filters on MIL Tasks. CoRR Mustafa Umit Oner, Jared Marc Song Kye-Jet, Hwee Kuan Lee, Wing-Kin Sung
2020	B	`ed.`	WALCOM: Algorithms and Computation - 14th International Conference, WALCOM 2020, Singapore, March 31 - April 2, 2020, Proceedings WALCOM M. Sohel Rahman, Kunihiko Sadakane, Wing-Kin Sung
2020	A*	`conf`	Weakly Supervised Clustering by Exploiting Unique Class Count. ICLR Mustafa Umit Oner, Hwee Kuan Lee, Wing-Kin Sung
2019	B	`conf`	A Linear Time Algorithm for the r-Gathering Problem on the Line (Extended Abstract). WALCOM Anik Sarker, Wing-Kin Sung, M. Sohel Rahman
2019	J	`jnl`	A Weakly Supervised Learning Based Clustering Framework. CoRR Mustafa Umit Oner, Hwee Kuan Lee, Wing-Kin Sung
2019	J	`jnl`	An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees. J. Comput. Biol. Jesper Jansson, Ramesh Rajaby, Wing-Kin Sung
2019	J	`jnl`	An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping. BMC Bioinform. Qiangwei Zhou, Jing-Quan Lim, Wing-Kin Sung, Guoliang Li
2019	C	`conf`	Computing the Rooted Triplet Distance Between Phylogenetic Networks. IWOCA Jesper Jansson, Konstantinos Mampentzidis, Ramesh Rajaby, Wing-Kin Sung
2019	B	`conf`	Greedy Consensus Tree and Maximum Greedy Consensus Tree Problems. WALCOM Wing-Kin Sung
2019	J	`jnl`	Guest Editors' Foreword. J. Graph Algorithms Appl. M. Sohel Rahman, Wing-Kin Sung, Ryuhei Uehara
2019	—	`ch.`	Learning Chromatin Interaction Using Hi-C Datasets. Encyclopedia of Bioinformatics and Computational Biology (2) Wing-Kin Sung
2019	J	`jnl`	Off-line and on-line algorithms for closed string factorization. Theor. Comput. Sci. Mai Alzamel, Costas S. Iliopoulos, W. F. Smyth, Wing-Kin Sung
2018	A*	`conf`	A Faster Construction of Greedy Consensus Trees. ICALP Pawel Gawrychowski, Gad M. Landau, Wing-Kin Sung, Oren Weimann
2018	J	`jnl`	Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. IEEE ACM Trans. Comput. Biol. Bioinform. Jesper Jansson, Ramesh Rajaby, Chuanqi Shen, Wing-Kin Sung
2018	C	`ed.`	Combinatorial Algorithms - 29th International Workshop, IWOCA 2018, Singapore, July 16-19, 2018, Proceedings IWOCA Costas S. Iliopoulos, Hon Wai Leong, Wing-Kin Sung
2018	J	`jnl`	Determining the Consistency of Resolved Triplets and Fan Triplets. J. Comput. Biol. Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung
2018	B	`ed.`	WALCOM: Algorithms and Computation - 12th International Conference, WALCOM 2018, Dhaka, Bangladesh, March 3-5, 2018, Proceedings WALCOM M. Sohel Rahman, Wing-Kin Sung, Ryuhei Uehara
2017	J	`jnl`	A Faster Construction of Phylogenetic Consensus Trees. CoRR Pawel Gawrychowski, Gad M. Landau, Wing-Kin Sung, Oren Weimann
2017	—	`conf`	An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees. AlCoB Jesper Jansson, Ramesh Rajaby, Wing-Kin Sung
2017	J	`jnl`	BATVI: Fast, sensitive and accurate detection of virus integrations. BMC Bioinform. Chandana Tennakoon, Wing-Kin Sung
2017	C	`conf`	Computing Asymmetric Median Tree of Two Trees via Better Bipartite Matching Algorithm. IWOCA Ramesh Rajaby, Wing-Kin Sung
2017	B	`conf`	Determining the Consistency of Resolved Triplets and Fan Triplets. RECOMB Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung
2017	C	`conf`	Efficient Identification of k-Closed Strings. EANN Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts, Wing-Kin Sung
2017	—	`conf`	Faster Algorithms for 1-Mappability of a Sequence. COCOA (2) Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2017	J	`jnl`	Faster algorithms for 1-mappability of a sequence. CoRR Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung
2017	J	`jnl`	On finding the Adams consensus tree. Inf. Comput. Jesper Jansson, Zhaoxian Li, Wing-Kin Sung
2016	—	`ch.`	Algorithms for Combining Rooted Triplets into a Galled Phylogenetic Network. Encyclopedia of Algorithms Jesper Jansson, Wing-Kin Sung
2016	J	`jnl`	Faster Algorithms for Computing the R* Consensus Tree. Algorithmica Jesper Jansson, Wing-Kin Sung, Hoa Vu, Siu-Ming Yiu
2016	J	`jnl`	Improved Algorithms for Constructing Consensus Trees. J. ACM Jesper Jansson, Chuanqi Shen, Wing-Kin Sung
2016	—	`ch.`	Indexed Approximate String Matching. Encyclopedia of Algorithms Wing-Kin Sung
2016	—	`ch.`	Maximum Agreement Supertree. Encyclopedia of Algorithms Jesper Jansson, Wing-Kin Sung
2016	B	`conf`	Minimal Phylogenetic Supertrees and Local Consensus Trees. MFCS Jesper Jansson, Wing-Kin Sung
2015	J	`jnl`	An O(m, log m)-Time Algorithm for Detecting Superbubbles. IEEE ACM Trans. Comput. Biol. Bioinform. Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar, Iana Pyrogova
2015	J	`jnl`	Linked Dynamic Tries with Applications to LZ-Compression in Sublinear Time and Space. Algorithmica Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2015	A	`conf`	On Finding the Adams Consensus Tree. STACS Jesper Jansson, Zhaoxian Li, Wing-Kin Sung
2014	J	`jnl`	CWig: compressed representation of Wiggle/BedGraph format. Bioinform. Huy Hoang Do, Wing-Kin Sung
2014	J	`jnl`	Fast relative Lempel-Ziv self-index for similar sequences. Theor. Comput. Sci. Huy Hoang Do, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2014	B	`conf`	Faster Algorithms for Computing the R* Consensus Tree. ISAAC Jesper Jansson, Wing-Kin Sung, Hoa Vu, Siu-Ming Yiu
2014	J	`jnl`	Guest Editorial for the International Conference on Genome Informatics (GIW 2013). IEEE ACM Trans. Comput. Biol. Bioinform. Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2013	J	`jnl`	3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data. J. Comput. Biol. ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing-Kin Sung
2013	C	`conf`	Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. WABI Jesper Jansson, Chuanqi Shen, Wing-Kin Sung
2013	J	`jnl`	Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. CoRR Jesper Jansson, Chuanqi Shen, Wing-Kin Sung
2013	B	`conf`	An Optimal Algorithm for Building the Majority Rule Consensus Tree. RECOMB Jesper Jansson, Chuanqi Shen, Wing-Kin Sung
2013	J	`jnl`	Compact Data structures for Big Data (NII Shonan Meeting 2013-10). NII Shonan Meet. Rep. Kunihiko Sadakane, Wing-Kin Sung
2013	J	`jnl`	Compressed Directed Acyclic Word Graph with Application in Local Alignment. Algorithmica Huy Hoang Do, Wing-Kin Sung
2013	J	`jnl`	Constructing the R* Consensus Tree of Two Trees in Subcubic Time. Algorithmica Jesper Jansson, Wing-Kin Sung
2013	A*	`conf`	Improved Algorithms for Constructing Consensus Trees. SODA Jesper Jansson, Chuanqi Shen, Wing-Kin Sung
2013	B	`conf`	Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data. RECOMB ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing-Kin Sung
2013	J	`jnl`	International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions. BMC Syst. Biol. Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2013	J	`jnl`	Simultaneously Learning DNA Motif Along with Its Position and Sequence Rank Preferences Through Expectation Maximization Algorithm. J. Comput. Biol. ZhiZhuo Zhang, Cheng Wei Chang, Hugo Willy, Edwin Cheung, Wing-Kin Sung
2013	J	`jnl`	The 24th International Conference on genome Informatics, Giw2013, in Singapore. J. Bioinform. Comput. Biol. Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
2012	J	`jnl`	BatMis: a fast algorithm for Bioinform. Chandana Tennakoon, Rikky W. Purbojati, Wing-Kin Sung
2012	J	`jnl`	Bioinformatics Applications in Genomics. Computer Wing-Kin Sung
2012	—	`conf`	CRAM: Compressed Random Access Memory. ICALP (1) Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2012	—	`conf`	Fast Relative Lempel-Ziv Self-index for Similar Sequences. FAW-AAIM Huy Hoang Do, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2012	J	`jnl`	More efficient periodic traversal in anonymous undirected graphs. Theor. Comput. Sci. Jurek Czyzowicz, Stefan Dobrev, Leszek Gasieniec, David Ilcinkas, Jesper Jansson, Ralf Klasing, Ioannis Lignos, Russell Martin, Kunihiko Sadakane, Wing-Kin Sung
2012	J	`jnl`	Polynomial-Time Algorithms for Building a Consensus MUL-Tree. J. Comput. Biol. Yun Cui, Jesper Jansson, Wing-Kin Sung
2012	B	`conf`	Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm. RECOMB ZhiZhuo Zhang, Cheng Wei Chang, Hugo Willy, Edwin Cheung, Wing-Kin Sung
2012	J	`jnl`	Ultra-succinct representation of ordered trees with applications. J. Comput. Syst. Sci. Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2011	J	`jnl`	A linear size index for approximate pattern matching. J. Discrete Algorithms Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
2011	B	`conf`	Algorithms for Building Consensus MUL-trees. ISAAC Yun Cui, Jesper Jansson, Wing-Kin Sung
2011	J	`jnl`	CENTDIST: discovery of co-associated factors by motif distribution. Nucleic Acids Res. ZhiZhuo Zhang, Cheng Wei Chang, Wan Ling Goh, Wing-Kin Sung, Edwin Cheung
2011	Misc	`conf`	Compressed Directed Acyclic Word Graph with Application in Local Alignment. COCOON Huy Hoang Do, Wing-Kin Sung
2011	J	`jnl`	Computing a Smallest Multilabeled Phylogenetic Tree from Rooted Triplets. IEEE ACM Trans. Comput. Biol. Bioinform. Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung
2011	J	`jnl`	Improved Algorithms for Maximum Agreement and Compatible Supertrees. Algorithmica Viet Tung Hoang, Wing-Kin Sung
2011	Misc	`conf`	Mining transcriptional association rules from breast cancer profile data. IRI Rakhi Malpani, Meiliu Lu, Du Zhang, Wing-Kin Sung
2011	B	`conf`	Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. RECOMB Song Gao, Niranjan Nagarajan, Wing-Kin Sung
2011	J	`jnl`	Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. J. Comput. Biol. Song Gao, Wing-Kin Sung, Niranjan Nagarajan
2011	J	`jnl`	PE-Assembler: Bioinform. Pramila Nuwantha Ariyaratne, Wing-Kin Sung
2011	J	`jnl`	Partial convex recolorings of trees and galled networks: Tight upper and lower bounds. ACM Trans. Algorithms Shlomo Moran, Sagi Snir, Wing-Kin Sung
2011	J	`jnl`	Structural Alignment of RNA with Complex Pseudoknot Structure. J. Comput. Biol. Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Brenda W. Y. Cheung, Siu-Ming Yiu
2011	J	`jnl`	Succinct data structures for Searchable Partial Sums with optimal worst-case performance. Theor. Comput. Sci. Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung
2010	J	`jnl`	A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinform. Han Xu, Lusy Handoko, Xueliang Wei, Chaopeng Ye, Jianpeng Sheng, Chia-Lin Wei, Feng Lin, Wing-Kin Sung
2010	J	`jnl`	Compressed Indexes for Approximate String Matching. Algorithmica Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
2010	J	`jnl`	Compressed random access memory CoRR Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2010	—	`conf`	Constructing the R* Consensus Tree of Two Trees in Subcubic Time. ESA (1) Jesper Jansson, Wing-Kin Sung
2010	C	`conf`	Indexing Similar DNA Sequences. AAIM Songbo Huang, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu
2010	J	`jnl`	Localized motif discovery in gene regulatory sequences. Bioinform. Vipin Narang, Ankush Mittal, Wing-Kin Sung
2010	J	`jnl`	SLiM on Diet: finding short linear motifs on domain interaction interfaces in Protein Data Bank. Bioinform. Hugo Willy, Fushan Song, Zeyar Aung, See-Kiong Ng, Wing-Kin Sung
2009	J	`jnl`	Breaking a Time-and-Space Barrier in Constructing Full-Text Indices. SIAM J. Comput. Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung
2009	J	`jnl`	Brief Overview of Bioinformatics Activities in Singapore. PLoS Comput. Biol. Frank Eisenhaber, Chee Keong Kwoh, See-Kiong Ng, Wing-Kin Sung, Limsoon Wong
2009	B	`conf`	Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets. ISAAC Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung
2009	B	`conf`	More Efficient Periodic Traversal in Anonymous Undirected Graphs. SIROCCO Jurek Czyzowicz, Stefan Dobrev, Leszek Gasieniec, David Ilcinkas, Jesper Jansson, Ralf Klasing, Ioannis Lignos, Russell A. Martin, Kunihiko Sadakane, Wing-Kin Sung
2009	J	`jnl`	More efficient periodic traversal in anonymous undirected graphs CoRR Jurek Czyzowicz, Stefan Dobrev, Leszek Gasieniec, David Ilcinkas, Jesper Jansson, Ralf Klasing, Yannis Lignos, Russell A. Martin, Kunihiko Sadakane, Wing-Kin Sung
2009	C	`conf`	Structural Alignment of RNA with Complex Pseudoknot Structure. WABI Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2009	—	`conf`	The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning. BICoB Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
2008	—	`conf`	A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data. ICCS (3) Vinsensius B. Vega, Yijun Ruan, Wing-Kin Sung
2008	J	`jnl`	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data. Bioinform. Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung
2008	J	`jnl`	Compressed indexing and local alignment of DNA. Bioinform. Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu
2008	—	`ch.`	Constructing a Galled Phylogenetic Network. Encyclopedia of Algorithms Wing-Kin Sung
2008	J	`jnl`	Fixed Parameter Polynomial Time Algorithms for Maximum Agreement and Compatible Supertrees CoRR Viet Tung Hoang, Wing-Kin Sung
2008	A	`conf`	Fixed Parameter Polynomial Time Algorithms for Maximum Agreement and Compatible Supertrees. STACS Viet Tung Hoang, Wing-Kin Sung
2008	J	`jnl`	Improved Approximate String Matching Using Compressed Suffix Data Structures. Algorithmica Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong
2008	—	`ch.`	Indexed Approximate String Matching. Encyclopedia of Algorithms Wing-Kin Sung
2008	J	`jnl`	LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens. BMC Bioinform. Wah-Heng Lee, Christopher W. Wong, Wan Yee Leong, Lance D. Miller, Wing-Kin Sung
2008	—	`ch.`	Maximum Agreement Supertree. Encyclopedia of Algorithms Wing-Kin Sung
2008	J	`jnl`	MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders. Bioinform. Edward Wijaya, Siu-Ming Yiu, Ngo Thanh Son, Kanagasabai Rajaraman, Wing-Kin Sung
2008	J	`jnl`	Non-overlapping Common Substrings Allowing Mutations. Math. Comput. Sci. Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu
2008	J	`jnl`	RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. J. Comput. Biol. Wah-Heng Lee, Wing-Kin Sung
2008	J	`jnl`	Spectrum-Based J. Comput. Biol. Huy Hoang Do, Kwok Pui Choi, Franco P. Preparata, Wing-Kin Sung, Louxin Zhang
2008	J	`jnl`	Using Indirect protein-protein Interactions for protein Complex Prediction. J. Bioinform. Comput. Biol. Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong
2007	J	`jnl`	A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays. Algorithmica Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu
2007	C	`conf`	An Experimental Study of Compressed Indexing and Local Alignments of DNA. COCOA Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu
2007	J	`jnl`	An efficient strategy for extensive integration of diverse biological data for protein function prediction. Bioinform. Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2007	A*	`conf`	CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences. ICDE Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
2007	—	`conf`	Compressed Dynamic Tries with Applications to LZ-Compression in Sublinear Time and Space. FSTTCS Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2007	J	`jnl`	Detection of generic spaced motifs using submotif pattern mining. Bioinform. Edward Wijaya, Kanagasabai Rajaraman, Siu-Ming Yiu, Wing-Kin Sung
2007	J	`jnl`	Fast algorithms for computing the tripartition-based distance between phylogenetic networks. J. Comb. Optim. Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung
2007	J	`jnl`	Identifying differentially expressed genes in Time-Course microarray Experiment without Replicate. J. Bioinform. Comput. Biol. Xu Han, Wing-Kin Sung, Lin Feng
2007	B	`conf`	RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. RECOMB Wah-Heng Lee, Wing-Kin Sung
2007	J	`jnl`	Reconstructing Recombination Network from Sequence Data: The Small Parsimony Problem. IEEE ACM Trans. Comput. Biol. Bioinform. C. Thach Nguyen, Nguyen Bao Nguyen, Wing-Kin Sung, Louxin Zhang
2007	B	`conf`	Space Efficient Indexes for String Matching with Don't Cares. ISAAC Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu
2007	C	`conf`	The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. WABI Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu
2007	A*	`conf`	Ultra-succinct representation of ordered trees. SODA Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2007	J	`jnl`	Using indirect protein interactions for the prediction of Gene Ontology functions. BMC Bioinform. Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006	J	`jnl`	A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences through Alignment. Algorithmica Jesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy
2006	B	`conf`	A Linear Size Index for Approximate Pattern Matching. CPM Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
2006	J	`jnl`	A correlated motif approach for finding short linear motifs from protein interaction networks. BMC Bioinform. Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kiong Ng
2006	J	`jnl`	Algorithms for Combining Rooted Triplets into a Galled Phylogenetic Network. SIAM J. Comput. Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung
2006	J	`jnl`	Approximate string matching using compressed suffix arrays. Theor. Comput. Sci. Trinh N. D. Huynh, Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung
2006	A	`conf`	Compressed Indexes for Approximate String Matching. ESA Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong
2006	—	`conf`	Differential Friendly Neighbors Algorithm for Differential Relationships Based Gene Selection and Classification using Microarray Data. DMIN Karuturi R. Krishna Murthy, Silvia Wong, Wing-Kin Sung, Lance D. Miller
2006	—	`conf`	Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions. BioDM Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006	J	`jnl`	Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinform. Hon Nian Chua, Wing-Kin Sung, Limsoon Wong
2006	J	`jnl`	Inferring Phylogenetic Relationships Avoiding Forbidden Rooted Triplets. J. Bioinform. Comput. Biol. Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung
2006	J	`jnl`	Inferring a level-1 phylogenetic network from a dense set of rooted triplets. Theor. Comput. Sci. Jesper Jansson, Wing-Kin Sung
2006	B	`conf`	Learning Gene Network Using Conditional Dependence. ICTAI Tie-Fei Liu, Wing-Kin Sung
2006	J	`jnl`	Learning Gene Network Using Time-delayed Bayesian Network. Int. J. Artif. Intell. Tools Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
2006	J	`jnl`	Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs. J. Comput. Biol. Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
2006	B	`conf`	LocalMotif - An In-Silico Tool for Detecting Localized Motifs in Regulatory Sequences. ICTAI Vipin Narang, Wing-Kin Sung, Ankush Mittal
2006	J	`jnl`	Model gene network by semi-fixed Bayesian network. Expert Syst. Appl. Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
2006	J	`jnl`	PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data. BMC Bioinform. Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Pramila Ariyaratne, Hong Sain Ooi, Chia-Lin Wei, Wing-Kin Sung, Yijun Ruan
2006	J	`jnl`	Probabilistic prediction of protein-protein interactions from the protein sequences. Comput. Biol. Medicine Arunkumar Chinnasamy, Ankush Mittal, Wing-Kin Sung
2005	B	`conf`	A better gap penalty for pairwise SVM. APBC Hon Nian Chua, Wing-Kin Sung
2005	J	`jnl`	Adaptive Control of Hybridization Noise in Dna Sequencing-by-hybridization. J. Bioinform. Comput. Biol. Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy
2005	A*	`conf`	Algorithms for combining rooted triplets into a galled phylogenetic network. SODA Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung
2005	B	`conf`	Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness. APBC Siu-Ming Yiu, P. Y. Chan, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting, Prudence W. H. Wong
2005	J	`jnl`	Computational modeling of oligonucleotide positional densities for human promoter prediction. Artif. Intell. Medicine Vipin Narang, Wing-Kin Sung, Ankush Mittal
2005	J	`jnl`	Computing the maximum agreement of phylogenetic networks. Theor. Comput. Sci. Charles Choy, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2005	C	`conf`	ConstrainedMotif: A Periodicity Constraint Based Algorithm to Predict Cell-Cycle Associated Promoter Motifs Using Time-Course Gene Expression Data. BIBE Yingren Liu, Karuturi R. Krishna Murthy, Wing-Kin Sung
2005	B	`conf`	Constructing a Smallest Refining Galled Phylogenetic Network. RECOMB Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung
2005	C	`conf`	Discriminative Fusion Approach for Automatic Image Annotation. MMSP De-Hong Wang, Sheng Gao, Qi Tian, Wing-Kin Sung
2005	J	`jnl`	Effective Algorithms for Tag Snp Selection. J. Bioinform. Comput. Biol. Tie-Fei Liu, Wing-Kin Sung, Yi Li, Jianjun Liu, Ankush Mittal, Pei-lin Mao
2005	B	`conf`	Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks. ISAAC Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung
2005	B	`conf`	Finding Short Right-Hand-on-the-Wall Walks in Graphs. SIROCCO Stefan Dobrev, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2005	B	`conf`	Improved Approximate String Matching Using Compressed Suffix Data Structures. ISAAC Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong
2005	B	`conf`	Inferring phylogenetic relationships avoiding forbidden rooted triplets. APBC Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung
2005	C	`conf`	Multimodality as a Criterion for Feature Selection in Unsupervised Analysis of Gene Expression Data. BIBE Yi Li, Wing-Kin Sung, Lance D. Miller
2005	J	`jnl`	Protein Structure and Fold Prediction Using Tree-augmented Naïve Bayesian Classifier. J. Bioinform. Comput. Biol. Arunkumar Chinnasamy, Wing-Kin Sung, Ankush Mittal
2005	J	`jnl`	Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines. BMC Bioinform. Jiren Wang, Wing-Kin Sung, Arun Krishnan, Kuo-Bin Li
2005	J	`jnl`	Rooted Maximum Agreement Supertrees. Algorithmica Jesper Jansson, Joseph H.-K. Ng, Kunihiko Sadakane, Wing-Kin Sung
2005	J	`jnl`	The mutated subsequence problem and locating conserved genes. Bioinform. Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu, X. Fan
2004	C	`conf`	A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment. WABI Jesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy
2004	C	`conf`	A Mutation-Sensitive Approach for Locating Conserved Gene Pairs between Related Species. BIBE Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu
2004	B	`conf`	Approximate String Matching Using Compressed Suffix Arrays. CPM Trinh N. D. Huynh, Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung
2004	B	`conf`	Compressed Index for Dynamic Text. Data Compression Conference Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu
2004	—	`conf`	Computing the Maximum Agreement of Phylogenetic Networks. CATS Charles Choy, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung
2004	C	`conf`	Constraint Based Method for Finding Motifs in DNA Sequences. BIBE Xiaoan Dong, Sam Yuan Sung, Wing-Kin Sung, Chew Lim Tan
2004	C	`conf`	Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets. BIBE Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng
2004	J	`jnl`	G-PRIMER: greedy algorithm for selecting minimal primer set. Bioinform. Jiren Wang, Kuo-Bin Li, Wing-Kin Sung
2004	A	`conf`	Gene Network Modeling through Semi-Fixed Bayesian Network. ECAI Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
2004	Misc	`conf`	Inferring a Level-1 Phylogenetic Network from a Dense Set of Rooted Triplets. COCOON Jesper Jansson, Wing-Kin Sung
2004	B	`conf`	Learning Multi-Time Delay Gene Network Using Bayesian Network Framework. ICTAI Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal
2004	B	`conf`	Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs. ISAAC Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung
2004	B	`conf`	News sports video shot classification with sports play field and motion features. ICIP De-Hong Wang, Qi Tian, Sheng Gao, Wing-Kin Sung
2004	J	`jnl`	Non-shared edges and nearest neighbor interchanges revisited. Inf. Process. Lett. Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2004	—	`conf`	Practical aspects of Compressed Suffix Arrays and FM-Index in Searching DNA Sequences. ALENEX/ANALC Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, Wai-Leuk Tse, Chi-Kwong Wong, Siu-Ming Yiu
2004	Misc	`conf`	Protein Structure and Fold Prediction Using Tree-Augmented Bayesian Classifier. Pacific Symposium on Biocomputing Arunkumar Chinnasamy, Wing-Kin Sung, Ankush Mittal
2004	B	`conf`	Rooted Maximum Agreement Supertrees. LATIN Jesper Jansson, Joseph H.-K. Ng, Kunihiko Sadakane, Wing-Kin Sung
2004	J	`jnl`	Subtree Transfer Distance For Degree-D Phylogenies. Int. J. Found. Comput. Sci. Wing-Kai Hon, Tak Wah Lam, Siu-Ming Yiu, Ming-Yang Kao, Wing-Kin Sung
2004	B	`conf`	The Maximum Agreement of Two Nested Phylogenetic Networks. ISAAC Jesper Jansson, Wing-Kin Sung
2003	A*	`conf`	Breaking a Time-and-Space Barrier in Constructing Full-Text Indices. FOCS Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung
2003	B	`conf`	Constructing Compressed Suffix Arrays with Large Alphabets. ISAAC Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung
2003	—	`conf`	Fast and Accurate Probe Selection Algorithm for Large Genomes. CSB Wing-Kin Sung, Wah-Heng Lee
2003	Misc	`conf`	On All-Substrings Alignment Problems. COCOON Wei Fu, Wing-Kai Hon, Wing-Kin Sung
2003	J	`jnl`	Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. J. Comput. Biol. Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2003	B	`conf`	Succinct Data Structures for Searchable Partial Sums. ISAAC Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung
2003	—	`conf`	Tag SNP selection by brute-force and heuristic algorithms. German Conference on Bioinformatics Tie-Fei Liu, Wing-Kin Sung, Pei-lin Mao, Ankush Mittal
2003	J	`jnl`	The Enhanced Double Digest Problem for DNA Physical Mapping. J. Comb. Optim. Ming-Yang Kao, Jared Samet, Wing-Kin Sung
2003	C	`conf`	Video Retrieval by Context-Based Interpretation of Time-to-Collision Descriptors. CAIP Ankush Mittal, Wing-Kin Sung
2002	Misc	`conf`	A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays. COCOON Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu
2002	J	`jnl`	Automatic construction of online catalog topologies. IEEE Trans. Syst. Man Cybern. Part C Wing-Kin Sung, David Yang, Siu-Ming Yiu, David Wai-Lok Cheung, Wai-Shing Ho, Tak Wah Lam
2002	J	`jnl`	Improved Phylogeny Comparisons: Non-Shared Edges Nearest Neighbor Interchanges, and Subtree Transfers CoRR Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2002	C	`conf`	On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization. WABI Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy
2001	J	`jnl`	A Decomposition Theorem for Maximum Weight Bipartite Matchings. SIAM J. Comput. Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2001	J	`jnl`	An Even Faster and More Unifying Algorithm for Comparing Trees via Unbalanced Bipartite Matchings CoRR Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2001	J	`jnl`	An Even Faster and More Unifying Algorithm for Comparing Trees via Unbalanced Bipartite Matchings. J. Algorithms Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2001	—	`conf`	Automatic Construction of Online Catalog Topologies. EC-Web Wing-Kin Sung, David Yang, Siu-Ming Yiu, Wai-Shing Ho, David Wai-Lok Cheung, Tak Wah Lam
2001	J	`jnl`	Cavity Matchings, Label Compressions, and Unrooted Evolutionary Trees CoRR Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2001	—	`conf`	Pervasive Multimedia Markup Language (PMML): an XML-based multimedia content specification for pervasive access. WWW Posters Wing-Kin Sung, Frank C. H. Tong, Kwok-Ho Yeung, David Wai-Lok Cheung, Chung-Jen Tan, William Wei Song
2001	J	`jnl`	Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs CoRR Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2001	C	`conf`	Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. BIBE Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu
2001	J	`jnl`	The Enhanced Double Digest Problem for DNA Physical Mapping CoRR Ming-Yang Kao, Jared Samet, Wing-Kin Sung
2000	J	`jnl`	A Decomposition Theorem for Maximum Weight Bipartite Matchings CoRR Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2000	B	`conf`	A Faster and Unifying Algorithm for Comparing Trees. CPM Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2000	J	`jnl`	Cavity Matchings, Label Compressions, and Unrooted Evolutionary Trees. SIAM J. Comput. Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
2000	—	`conf`	Construction of Online Catalog Topologies Using Decision Trees. WECWIS David Yang, Wing-Kin Sung, Siu-Ming Yiu, David Wai-Lok Cheung, Wai-Shing Ho, Tak Wah Lam, Sau Dan Lee
2000	—	`conf`	The Enhanced Double Digest Problem for DNA Physical Mapping. SWAT Ming-Yang Kao, Jared Samet, Wing-Kin Sung
2000	B	`conf`	Unbalanced and Hierarchical Bipartite Matchings with Applications to Labeled Tree Comparison. ISAAC Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
1999	A	`conf`	A Decomposition Theorem for Maximum Weight Bipartite Matchings with Applications to Evolutionary Trees. ESA Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
1998	—	`conf`	Default-Sensitive PreProcessings for Finding Maxima. CATS Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
1998	—	`—`	Fast labeled tree comparison via better matching algorithms Wing-Kin Sung
1997	B	`conf`	All-Cavity Maximum Matchings. ISAAC Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
1997	A*	`conf`	General Techniques for Comparing Unrooted Evolutionary Trees. STOC Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting
1996	—	`conf`	Computing the Unrooted Maximum Agreement Subtree in Sub-quadratic Time. SWAT Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting
1996	J	`jnl`	Computing the Unrooted Maximum Agreement Subtree in Sub-quadratic Time. Nord. J. Comput. Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting