William Speier

79 papers A* 1A 1C 4Misc 6Journal 49Unranked 17

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Computational Mapping of Reactive Stroma in Prostate Cancer Yields Interpretable, Prognostic Biomarkers. CoRR Mara Pleasure, Ekaterina Redekop, Dhakshina Ilango, Zichen Wang, Vedrana Ivezic, Kimberly Flores, Israa Laklouk, Jitin Makker, Gregory Fishbein, Anthony Sisk, William Speier, Corey W. Arnold
2026	J	`jnl`	Laya: A LeJEPA Approach to EEG via Latent Prediction over Reconstruction. CoRR Saarang Panchavati, Uddhav Panchavati, Corey W. Arnold, William Speier
2026	J	`jnl`	Pretext Matters: An Empirical Study of SSL Methods in Medical Imaging. CoRR Vedrana Ivezic, Mara Pleasure, Ashwath Radhachandran, Saarang Panchavati, Shreeram S. Athreya, Vivek Sant, Benjamin Emert, Gregory Fishbein, Corey W. Arnold, William Speier
2026	J	`jnl`	US-JEPA: A Joint Embedding Predictive Architecture for Medical Ultrasound. CoRR Ashwath Radhachandran, Vedrana Ivezic, Shreeram S. Athreya, Ronit Anilkumar, Corey W. Arnold, William Speier
2025	—	`conf`	ATHENA: Atherosclerosis through Hierarchical Explainable Neural Network Analysis. BCB Irsyad Adam, Steven Swee, Erika Yilin Zheng, Ethan Ji, William Speier, Ding Wang, Alex Bui, Wei Wang, Karol E. Watson, Peipei Ping
2025	J	`jnl`	Atherosclerosis through Hierarchical Explainable Neural Network Analysis. CoRR Irsyad Adam, Steven S. Raman, Erika Yilin, Ethan Ji, William Speier, Dean Wang, Alex Bui, Wei Wang, Karol E. Watson, Peipei Ping
2025	—	`conf`	CytoFM: The first cytology foundation model. CVPR Workshops Vedrana Ivezic, Ashwath Radhachandran, Ekaterina Redekop, Shreeram S. Athreya, Dongwoo Lee, Vivek Sant, Corey W. Arnold, William Speier
2025	J	`jnl`	CytoFM: The first cytology foundation model. CoRR Vedrana Ivezic, Ashwath Radhachandran, Ekaterina Redekop, Shreeram S. Athreya, Dongwoo Lee, Vivek Sant, Corey W. Arnold, William Speier
2025	J	`jnl`	DSA-NRP: No-Reflow Prediction from Angiographic Perfusion Dynamics in Stroke EVT. CoRR Shreeram S. Athreya, Carlos Olivares, Ameera Ismail, Kambiz Nael, William Speier, Corey W. Arnold
2025	J	`jnl`	Increasing adherence and collecting symptom-specific biometric signals in remote monitoring of heart failure patients: a randomized controlled trial. J. Am. Medical Informatics Assoc. Sukanya Mohapatra, Mirna Issa, Vedrana Ivezic, Rose Doherty, Leonard S. Marks, Esther Lan, Shawn Chen, Keith Rozett, Lauren Cullen, Wren Reynolds, Rose Rocchio, Gregg C. Fonarow, Michael K. Ong, William Speier, Corey W. Arnold
2025	J	`jnl`	Mentality: A Mamba-based Approach towards Foundation Models for EEG. CoRR Saarang Panchavati, Corey W. Arnold, William Speier
2025	—	`conf`	Prototype-Guided Diffusion for Digital Pathology: Achieving Foundation Model Performance with Minimal Clinical Data. CVPR Workshops Ekaterina Redekop, Mara Pleasure, Vedrana Ivezic, Zichen Wang, Kimberly Flores, Anthony Sisk, William Speier, Corey W. Arnold
2025	J	`jnl`	Prototype-Guided Diffusion for Digital Pathology: Achieving Foundation Model Performance with Minimal Clinical Data. CoRR Ekaterina Redekop, Mara Pleasure, Vedrana Ivezic, Zichen Wang, Kimberly Flores, Anthony Sisk, William Speier, Corey W. Arnold
2025	J	`jnl`	SPADE: Spatial Transcriptomics and Pathology Alignment Using a Mixture of Data Experts for an Expressive Latent Space. CoRR Ekaterina Redekop, Mara Pleasure, Zichen Wang, Kimberly Flores, Anthony Sisk, William Speier, Corey W. Arnold
2025	J	`jnl`	STACT-Time: Spatio-Temporal Cross Attention for Cine Thyroid Ultrasound Time Series Classification. CoRR Irsyad Adam, Tengyue Zhang, Steven S. Raman, Zhuyu Qiu, Brandon Taraku, Hexiang Feng, Sile Wang, Ashwath Radhachandran, Shreeram S. Athreya, Vedrana Ivezic, Peipei Ping, Corey W. Arnold, William Speier
2025	J	`jnl`	Zero-shot Medical Event Prediction Using a Generative Pre-trained Transformer on Electronic Health Records. CoRR Ekaterina Redekop, Zichen Wang, Rushikesh Kulkarni, Mara Pleasure, Aaron Chin, Hamid Reza Hassanzadeh, Brian L. Hill, Melika Emami, William Speier, Corey W. Arnold
2025	J	`jnl`	Zero-shot medical event prediction using a generative pretrained transformer on electronic health records. J. Am. Medical Informatics Assoc. Ekaterina Redekop, Zichen Wang, Rushikesh Kulkarni, Mara Pleasure, Aaron Chin, Hamid Reza Hassanzadeh, Brian L. Hill, Melika Emami, William Speier, Corey W. Arnold
2024	J	`jnl`	A multitask approach for automated detection and segmentation of thyroid nodules in ultrasound images. Comput. Biol. Medicine Ashwath Radhachandran, Adam Kinzel, Joseph Chen, Vivek Sant, Maitraya Patel, Rinat Masamed, Corey W. Arnold, William Speier
2024	—	`conf`	Codebook VQ-VAE Approach for Prostate Cancer Diagnosis using Multiparametric MRI. CVPR Workshops Ekaterina Redekop, Mara Pleasure, Zichen Wang, Karthik V. Sarma, Adam Kinnaird, William Speier, Corey W. Arnold
2024	J	`jnl`	Digital Volumetric Biopsy Cores Improve Gleason Grading of Prostate Cancer Using Deep Learning. CoRR Ekaterina Redekop, Mara Pleasure, Zichen Wang, Anthony Sisk, Yang Zong, Kimberly Flores, William Speier, Corey W. Arnold
2024	J	`jnl`	Evaluation Of P300 Speller Performance Using Large Language Models Along With Cross-Subject Training. CoRR Nithin Parthasarathy, James Soetedjo, Saarang Panchavati, Nitya Parthasarathy, Corey W. Arnold, Nader Pouratian, William Speier
2024	J	`jnl`	High Performance P300 Spellers Using GPT2 Word Prediction With Cross-Subject Training. CoRR Nithin Parthasarathy, James Soetedjo, Saarang Panchavati, Nitya Parthasarathy, Corey W. Arnold, Nader Pouratian, William Speier
2024	—	`conf`	Incorporating flash adjacency into the classifier for a language model-based P300 Speller. ICHMS Tianze Ma, Ben Falkenburg, William Speier
2024	J	`jnl`	Reducing Overtreatment of Indeterminate Thyroid Nodules Using a Multimodal Deep Learning Model. CoRR Shreeram S. Athreya, Andrew Melehy, Sujit Silas Armstrong Suthahar, Vedrana Ivezic, Ashwath Radhachandran, Vivek Sant, Chace Moleta, Henry Zheng, Maitraya Patel, Rinat Masamed, Corey W. Arnold, William Speier
2024	—	`conf`	ThyGraph: A Graph-Based Approach for Thyroid Nodule Diagnosis from Ultrasound Studies. MICCAI (4) Ashwath Radhachandran, Alekhya Vittalam, Vedrana Ivezic, Vivek Sant, Shreeram S. Athreya, Chace Moleta, Maitraya Patel, Rinat Masamed, Corey W. Arnold, William Speier
2023	—	`conf`	Deep Learning for Tumor-Associated Stroma Identification in Prostate Histopathology Slides. MICCAI (6) Zichen Wang, Mara Pleasure, Haoyue Zhang, Kimberly Flores, Anthony Sisk, William Speier, Corey W. Arnold
2023	—	`conf`	Pathology-Based Ischemic Stroke Etiology Classification via Clot Composition Guided Multiple Instance Learning. ICCV (Workshops) Mara Pleasure, Ekaterina Redekop, Jennifer S. Polson, Haoyue Zhang, Naoki Kaneko, William Speier, Corey W. Arnold
2023	J	`jnl`	Predicting Thrombectomy Recanalization from CT Imaging Using Deep Learning Models. CoRR Haoyue Zhang, Jennifer S. Polson, Eric J. Yang, Kambiz Nael, William Speier, Corey W. Arnold
2023	Misc	`conf`	Pretrained Transformers for Seizure Detection. ICASSP Saarang Panchavati, Samuel Vander Dussen, Hemal Semwal, Ahmed Ali, Justin Chen, Haoran Li, Corey W. Arnold, William Speier
2023	J	`jnl`	Synthesizing MR Image Contrast Enhancement Using 3D High-Resolution ConvNets. IEEE Trans. Biomed. Eng. Chao Chen, Catalina Raymond, William Speier, Xinyu Jin, Timothy F. Cloughesy, Dieter R. Enzmann, Benjamin M. Ellingson, Corey W. Arnold
2023	J	`jnl`	Ultrasound Image Enhancement using CycleGAN and Perceptual Loss. CoRR Shreeram S. Athreya, Ashwath Radhachandran, Vedrana Ivezic, Vivek Sant, Corey W. Arnold, William Speier
2022	J	`jnl`	Attention-Guided Discriminative Region Localization and Label Distribution Learning for Bone Age Assessment. IEEE J. Biomed. Health Informatics Chao Chen, Zhihong Chen, Xinyu Jin, Lanjuan Li, William Speier, Corey W. Arnold
2022	—	`conf`	Attention-Guided Prostate Lesion Localization and Grade Group Classification with Multiple Instance Learning. MIDL Ekaterina Redekop, Karthik V. Sarma, Adam Kinnaird, Anthony Sisk, Steven S. Raman, Leonard S. Marks, William Speier, Corey W. Arnold
2022	J	`jnl`	Design considerations for a hierarchical semantic compositional framework for medical natural language understanding. CoRR Ricky K. Taira, Anders O. Garlid, William Speier
2022	—	`conf`	Fully Automated Approaches for Localization of Intraoperative Electrocorticographic Electrodes. MetroXRAINE Kaiyang Victor Cheng, Han Jie Shawn Liu, Brianna Sun, Selina Wu, William Speier
2022	J	`jnl`	High resolution histopathology image generation and segmentation through adversarial training. Medical Image Anal. Wenyuan Li, Jiayun Li, Jennifer Polson, Zichen Wang, William Speier, Corey W. Arnold
2022	C	`conf`	MobileNetV2 Based Diagnosis and Grading of Limbal Stem Cell Deficiency. BIBE Patrick Liu, Saarang Panchavati, Mara Pleasure, Nathan Siu, Clemence Bonnet, Sophie Deng, Corey W. Arnold, William Speier
2022	J	`jnl`	PathAL: An Active Learning Framework for Histopathology Image Analysis. IEEE Trans. Medical Imaging Wenyuan Li, Jiayun Li, Zichen Wang, Jennifer Polson, Anthony E. Sisk, Dipti P. Sajed, William Speier, Corey W. Arnold
2021	—	`conf`	A Machine Learning Approach to Predict Acute Ischemic Stroke Thrombectomy Reperfusion using Discriminative MR Image Features. BHI Haoyue Zhang, Jennifer Polson, Kambiz Nael, Noriko Salamon, Bryan Yoo, William Speier, Corey W. Arnold
2021	—	`conf`	A Semi-Supervised Learning Framework to Leverage Proxy Information for Stroke MRI Analysis. EMBC Jennifer Polson, Haoyue Zhang, Kambiz Nael, Noriko Salamon, Bryan Yoo, Namkug Kim, Dong-Wha Kang, William Speier, Corey W. Arnold
2021	J	`jnl`	A multi-resolution model for histopathology image classification and localization with multiple instance learning. Comput. Biol. Medicine Jiayun Li, Wenyuan Li, Anthony E. Sisk, Huihui Ye, W. Dean Wallace, William Speier, Corey W. Arnold
2021	C	`conf`	Automatic Estimation of Limbal Stem Cell Densities in Cultured Epithelial Cell Microscopy Imaging. BIBE Nathan Siu, Maxime Ruiz, Sheyla Gonzalez Garrido, Yu Yan, Dylan Steinecke, Elizabeth Rao, Rachel Choi, Sarah Robertson, Sophie Deng, Corey W. Arnold, William Speier
2021	J	`jnl`	Bidirectional Representation Learning From Transformers Using Multimodal Electronic Health Record Data to Predict Depression. IEEE J. Biomed. Health Informatics Yiwen Meng, William Speier, Michael K. Ong, Corey W. Arnold
2021	J	`jnl`	Federated learning improves site performance in multicenter deep learning without data sharing. J. Am. Medical Informatics Assoc. Karthik V. Sarma, Stephanie A. Harmon, Thomas Sanford, Holger R. Roth, Ziyue Xu, Jesse Tetreault, Daguang Xu, Mona G. Flores, Alex G. Raman, Rushikesh Kulkarni, Bradford J. Wood, Peter L. Choyke, Alan Priester, Leonard S. Marks, Steven S. Raman, Dieter Enzmann, Baris Turkbey, William Speier, Corey W. Arnold
2021	J	`jnl`	HCET: Hierarchical Clinical Embedding With Topic Modeling on Electronic Health Records for Predicting Future Depression. IEEE J. Biomed. Health Informatics Yiwen Meng, William Speier, Michael K. Ong, Corey W. Arnold
2021	—	`conf`	Hierarchical Graph Pathomic Network for Progression Free Survival Prediction. MICCAI (8) Zichen Wang, Jiayun Li, Zhufeng Pan, Wenyuan Li, Anthony E. Sisk, Huihui Ye, William Speier, Corey W. Arnold
2021	J	`jnl`	Intra-domain task-adaptive transfer learning to determine acute ischemic stroke onset time. Comput. Medical Imaging Graph. Haoyue Zhang, Jennifer S. Polson, Kambiz Nael, Noriko Salamon, Bryan Yoo, Suzie El-Saden, Fabien Scalzo, William Speier, Corey W. Arnold
2020	J	`jnl`	A Machine Learning Approach to Classifying Self-Reported Health Status in a Cohort of Patients With Heart Disease Using Activity Tracker Data. IEEE J. Biomed. Health Informatics Yiwen Meng, William Speier, Chrisandra Shufelt, Sandy Joung, Jennifer E. Van Eyk, C. Noel Bairey Merz, Mayra Lopez, Brennan Spiegel, Corey W. Arnold
2020	J	`jnl`	A Multi-resolution Model for Histopathology Image Classification and Localization with Multiple Instance Learning. CoRR Jiayun Li, Wenyuan Li, Anthony E. Sisk, Huihui Ye, W. Dean Wallace, William Speier, Corey W. Arnold
2020	J	`jnl`	Attention-Guided Discriminative Region Localization for Bone Age Assessment. CoRR Chao Chen, Zhihong Chen, Xinyu Jin, Lanjuan Li, William Speier, Corey W. Arnold
2020	J	`jnl`	Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data for Chronic to Predict Depression. CoRR Yiwen Meng, William Speier, Michael K. Ong, Corey W. Arnold
2020	J	`jnl`	Intra-Domain Task-Adaptive Transfer Learning to Determine Acute Ischemic Stroke Onset Time. CoRR Haoyue Zhang, Jennifer S. Polson, Kambiz Nael, Noriko Salamon, Bryan Yoo, Suzie El-Saden, Fabien Scalzo, William Speier, Corey W. Arnold
2020	C	`conf`	Maintaining High Accuracy General P300 Speller Using the Language Modeling and Dynamic Stopping. BIBE James Soetedjo, Osita Sean Keluo-Udeke, Corey W. Arnold, Nader Pouratian, William Speier
2020	C	`conf`	Optimizing P300 speller performance using language models for character and word prediction. BIBE Nithin Parthasarathy, Corey W. Arnold, Nader Pouratian, William Speier
2020	J	`jnl`	Semi-supervised learning using adversarial training with good and bad samples. Mach. Vis. Appl. Wenyuan Li, Zichen Wang, Yuguang Yue, Jiayun Li, William Speier, Mingyuan Zhou, Corey W. Arnold
2019	J	`jnl`	A Machine Learning Approach for Classifying Ischemic Stroke Onset Time From Imaging. IEEE Trans. Medical Imaging King Chung Ho, William Speier, Haoyue Zhang, Fabien Scalzo, Suzie El-Saden, Corey W. Arnold
2019	—	`conf`	A Self-Paced P300 speller with Improved Typing Speed using continuous stimulus Presentations. GBCIC William Speier, Corey W. Arnold, Nand Chandravadia, Dustin Roberts, Shrita Pendekanti, Andrew Marttini, Nader Pouratian
2019	J	`jnl`	A protocol integrating remote patient monitoring patient reported outcomes and cardiovascular biomarkers. npj Digit. Medicine Chrisandra Shufelt, Eldin Dzubur, Sandy Joung, Garth Fuller, Kelly N. Mouapi, Irene Van Den Broek, Mayra Lopez, Shivani Dhawan, Corey W. Arnold, William Speier, Mitra Mastali, Qin Fu, Jennifer E. Van Eyk, Brennan Spiegel, C. Noel Bairey Merz
2019	J	`jnl`	An attention-based multi-resolution model for prostate whole slide imageclassification and localization. CoRR Jiayun Li, Wenyuan Li, Arkadiusz Gertych, Beatrice S. Knudsen, William Speier, Corey W. Arnold
2019	A	`conf`	Identifying Input Features for Development of Real-Time Translation of Neural Signals to Text. INTERSPEECH Janaki Sheth, Ariel Tankus, Michelle Tran, Lindy Comstock, Itzhak Fried, William Speier
2019	—	`conf`	LSTM Network for Prediction of Hemorrhagic Transformation in Acute Stroke. MICCAI (4) Yannan Yu, Bhargav Parsi, William Speier, Corey W. Arnold, Min Lou, Fabien Scalzo
2019	J	`jnl`	Semi-supervised Learning using Adversarial Training with Good and Bad Samples. CoRR Wenyuan Li, Zichen Wang, Yuguang Yue, Jiayun Li, William Speier, Mingyuan Zhou, Corey W. Arnold
2019	—	`conf`	Semi-supervised learning based on generative adversarial network: a comparison between good GAN and bad GAN approach. CVPR Workshops Wenyuan Li, Zichen Wang, Jiayun Li, Jennifer Polson, William Speier, Corey W. Arnold
2019	J	`jnl`	Semi-supervised learning based on generative adversarial network: a comparison between good GAN and bad GAN approach. CoRR Wenyuan Li, Zichen Wang, Jiayun Li, Jennifer Polson, William Speier, Corey W. Arnold
2019	J	`jnl`	Translating neural signals to text using a Brain-Machine Interface. CoRR Janaki Sheth, Ariel Tankus, Michelle Tran, Nader Pouratian, Itzhak Fried, William Speier
2019	J	`jnl`	Using Sequential Decision Making to Improve Lung Cancer Screening Performance. IEEE Access Panayiotis Petousis, Audrey Winter, William Speier, Denise R. Aberle, William Hsu, Alex A. T. Bui
2018	J	`jnl`	An EM-based semi-supervised deep learning approach for semantic segmentation of histopathological images from radical prostatectomies. Comput. Medical Imaging Graph. Jiayun Li, William Speier, King Chung Ho, Karthik V. Sarma, Arkadiusz Gertych, Beatrice S. Knudsen, Corey W. Arnold
2018	J	`jnl`	Evaluating utility and compliance in a patient-based eHealth study using continuous-time heart rate and activity trackers. J. Am. Medical Informatics Assoc. William Speier, Eldin Dzubur, Mary Zide, Chrisandra Shufelt, Sandy Joung, Jennifer E. Van Eyk, C. Noel Bairey Merz, Mayra Lopez, Brennan Spiegel, Corey W. Arnold
2018	Misc	`conf`	Predicting Patient Health Status using Activity Tracker Data. AMIA Yiwen Meng, William Speier, Eldin Dzubur, Brennan M. R. Spiegel, Corey W. Arnold
2017	Misc	`conf`	Classifying Acute Ischemic Stroke Onset Time using Deep Imaging Features. AMIA King Chung Ho, William Speier, Suzie M. El-Saden, Corey W. Arnold
2016	J	`jnl`	Evaluating topic model interpretability from a primary care physician perspective. Comput. Methods Programs Biomed. Corey W. Arnold, Andrea Oh, Shawn Chen, William Speier
2016	J	`jnl`	Using phrases and document metadata to improve topic modeling of clinical reports. J. Biomed. Informatics William Speier, Michael K. Ong, Corey W. Arnold
2015	—	`—`	Toward real-time communication using brain-computer interface systems. William Speier
2014	Misc	`conf`	Motivating the Additional Use of External Validity: Examining Transportability in a Model of Glioblastoma Multiforme. AMIA Kyle Singleton, William Speier, Alex A. T. Bui, William Hsu
2014	Misc	`conf`	Predicting Discharge Mortality after Acute Ischemic Stroke Using Balanced Data. AMIA King Chung Ho, William Speier, Suzie El-Saden, David S. Liebeskind, Jeffrey L. Saver, Alex A. T. Bui, Corey W. Arnold
2012	A*	`conf`	A topic model of clinical reports. SIGIR Corey W. Arnold, William Speier
2012	Misc	`conf`	Automated Extraction of Reported Statistical Analyses: Towards a Logical Representation of Clinical Trial Literature. AMIA William Hsu, William Speier, Ricky K. Taira
2012	J	`jnl`	Updating annotations with the distributed annotation system and the automated sequence annotation pipeline. Bioinform. William Speier, Michael F. Ochs
2011	—	`conf`	Robust Skull Stripping of Clinical Glioblastoma Multiforme Data. MICCAI (3) William Speier, Juan Eugenio Iglesias, Leila El-Kara, Zhuowen Tu, Corey W. Arnold