William S. Noble

19 papers A* 1Misc 1Journal 12Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model.
Bioinform.
Tangqi Fang, Yifeng Liu, Addie Woicik, Minsi Lu, Anupama Jha, Xiao Wang, Gang Li, Borislav H. Hristov, Zixuan Liu, Hanwen Xu, William S. Noble, Sheng Wang
2023 J jnl
Inference of 3D genome architecture by modeling overdispersion of Hi-C data.
Bioinform.
Nelle Varoquaux, William S. Noble, Jean-Philippe Vert
2022 A* conf
De novo mass spectrometry peptide sequencing with a transformer model.
ICML
Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble
2020 — conf
Avocado: Deep tensor factorization characterizes the human epigenome via imputation of tens of thousands of functional experiments.
BCB
Jacob M. Schreiber, Timothy J. Durham, William S. Noble, Jeffrey A. Bilmes
2020 — conf
Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics.
BCB
Jacob M. Schreiber, Deepthi Hegde, William S. Noble
2019 J jnl
MoMo: discovery of statistically significant post-translational modification motifs.
Bioinform.
Alice Cheng, Charles E. Grant, William S. Noble, Timothy L. Bailey
2019 J jnl
Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry.
IEEE ACM Trans. Comput. Biol. Bioinform.
Wenruo Bai, Jeffrey A. Bilmes, William S. Noble
2019 J jnl
sbpy: A Python module for small-body planetary astronomy.
J. Open Source Softw.
Michael Mommert, Michael S. P. Kelley, Miguel de Val-Borro, Jian-Yang Li, Giannina Guzman, Brigitta M. Sipocz, Josef Durech, Mikael Granvik, William S. Noble, Nick Moskovitz, Antti Penttilä, Nalin Samarasinha
2018 Misc conf
Unveiling Elements of Genomic Architecture with Genome Wide Chromatin Conformation Capture.
AMIA
Aakash Sur, Jackie McDonald, Bryan Jensen, William S. Noble, Peter J. Myler
2017 J jnl
Finding the optimal Bayesian network given a constraint graph.
PeerJ Comput. Sci.
Jacob M. Schreiber, William S. Noble
2017 J jnl
Finding the optimal bayesian network given a constraint graph.
PeerJ Prepr.
Jacob M. Schreiber, William S. Noble
2017 J jnl
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.
Bioinform.
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein
2017 — conf
Training Compressed Fully-Connected Networks with a Density-Diversity Penalty.
ICLR (Poster)
Shengjie Wang, Haoran Cai, Jeff A. Bilmes, William S. Noble
2016 — conf
Bipartite matching generalizations for peptide identification in tandem mass spectrometry.
BCB
Wenruo Bai, Jeffrey A. Bilmes, William S. Noble
2016 J jnl
Faster and more accurate graphical model identification of tandem mass spectra using trellises.
Bioinform.
Shengjie Wang, John T. Halloran, Jeff A. Bilmes, William S. Noble
2015 J jnl
The MEME Suite.
Nucleic Acids Res.
Timothy L. Bailey, James Johnson, Charles E. Grant, William S. Noble
2014 J jnl
Comparative analysis of metazoan chromatin organization Open.
Nat.
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park
2012 — conf
A statistical approach to peptide identification from clustered tandem mass spectrometry data.
BIBM Workshops
Soyoung Ryu, David R. Goodlett, William S. Noble, Vladimir N. Minin
2010 J jnl
Prediction of Phenotype Information from Genotype Data.
Commun. Inf. Syst.
Jens Gramm, Richard M. Karp, William S. Noble, Roded Sharan, Qianfei Wang, Nir Yosef