William S. Bush

42 papers B 1C 1Misc 9Journal 21Unranked 6

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. PLoS Comput. Biol. Zhenxing Guo, Daoyu Duan, Wen Tang, Julia Zhu, William S. Bush, Liangliang Zhang, Xiaofeng Zhu, Fulai Jin, Hao Feng
2021	J	`jnl`	Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources. BMC Bioinform. Neel Patel, William S. Bush
2020	Misc	`conf`	Frequency of ClinVar Pathogenic Variants in Chronic Kidney Disease Patients Surveyed for Return ofResearch Results at a Cleveland Public Hospital. PSB Dana C. Crawford, John Lin, Jessica Cooke Bailey, Tyler Kinzy, John R. Sedor, John F. O'Toole, William S. Bush
2020	Misc	`conf`	Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies. PSB Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush
2020	Misc	`conf`	Packaging Biocomputing Software to Maximize Distribution and Reuse. PSB William S. Bush, Nicholas Wheeler, Brett K. Beaulieu-Jones, Christian Darabos
2019	—	`ch.`	Genome-Wide Association Studies. Encyclopedia of Bioinformatics and Computational Biology (2) William S. Bush
2018	J	`jnl`	Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush
2018	Misc	`conf`	Integrating community-level data resources for precision medicine research. PSB William S. Bush, Dana C. Crawford, Farren Briggs, Darcy Freedman, Chantel Sloan
2018	Misc	`conf`	Local ancestry transitions modify snp-trait associations. PSB Alexandra E. Fish, Dana C. Crawford, John A. Capra, William S. Bush
2018	J	`jnl`	Three-dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia. BMC Bioinform. R. Michael Sivley, Jonathan H. Sheehan, Jonathan A. Kropski, Joy D. Cogan, Timothy S. Blackwell, John A. Phillips, William S. Bush, Jens Meiler, John A. Capra
2018	J	`jnl`	Transition-transversion encoding and genetic relationship metric in ReliefF feature selection improves pathway enrichment in GWAS. BioData Min. M. Arabnejad, Bryan A. Dawkins, William S. Bush, Bill C. White, A. R. Harkness, Brett A. McKinney
2017	J	`jnl`	Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. Bioinform. Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush
2017	—	`conf`	Reducing Clinical Noise for Body Mass Index Measures Due to Unit and Transcription Errors in the Electronic Health Record. CRI Robert J. Goodloe, Eric Farber-Eger, Jonathan Boston, Dana C. Crawford, William S. Bush
2015	J	`jnl`	Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models. BMC Bioinform. Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam A Brantley, Jonathan L. Haines, William S. Bush
2015	J	`jnl`	Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry. BioData Min. Logan Dumitrescu, Nicole A. Restrepo, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford
2014	B	`conf`	Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome. EvoApplications William S. Bush, Jonathan L. Haines
2014	J	`jnl`	Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies. BioData Min. Sabrina L. Mitchell, Jacob B. Hall, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford
2014	J	`jnl`	SecureMA: protecting participant privacy in genetic association meta-analysis. Bioinform. Wei Xie, Murat Kantarcioglu, William S. Bush, Dana C. Crawford, Joshua C. Denny, Raymond Heatherly, Bradley A. Malin
2014	Misc	`conf`	Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients. Pacific Symposium on Biocomputing Matthew Oetjens, William S. Bush, Kelly A. Birdwell, Holli H. Dilks, Erica A. Bowton, Joshua C. Denny, Russell A. Wilke, Dan M. Roden, Dana C. Crawford
2013	Misc	`conf`	Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush
2013	—	`ed.`	Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 11th European Conference, EvoBIO 2013, Vienna, Austria, April 3-5, 2013. Proceedings EvoBio Leonardo Vanneschi, William S. Bush, Mario Giacobini
2013	—	`conf`	Knowledge-Constrained K-Medoids Clustering of Regulatory Rare Alleles for Burden Tests. EvoBIO R. Michael Sivley, Alexandra E. Fish, William S. Bush
2013	J	`jnl`	Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists. Database J. Biol. Databases Curation Laura K. Wiley, R. Michael Sivley, William S. Bush
2013	J	`jnl`	Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status. J. Am. Medical Informatics Assoc. Laura K. Wiley, Anushi Shah, Hua Xu, William S. Bush
2012	J	`jnl`	A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data. J. Am. Medical Informatics Assoc. Carrie C. Buchanan, Eric Torstenson, William S. Bush, Marylyn D. Ritchie
2012	J	`jnl`	Chapter 11: Genome-Wide Association Studies. PLoS Comput. Biol. William S. Bush, Jason H. Moore
2012	—	`ed.`	Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 10th European Conference, EvoBIO 2012, Málaga, Spain, April 11-13, 2012. Proceedings EvoBio Mario Giacobini, Leonardo Vanneschi, William S. Bush
2012	—	`conf`	Introduction to bioinformatics and computational biology. GECCO (Companion) William S. Bush
2011	Misc	`conf`	Multivariate Analysis of Regulatory Snps: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity. Pacific Symposium on Biocomputing Stephen D. Turner, William S. Bush
2010	J	`jnl`	Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus. Bioinform. William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2009	—	`—`	A Knowledge-Driven Multi-Locus Analysis of Multiple Sclerosis Susceptiblity. William S. Bush
2009	Misc	`conf`	Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies. Pacific Symposium on Biocomputing William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2009	—	`conf`	Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks. EvoBIO Stephen D. Turner, Marylyn D. Ritchie, William S. Bush
2009	J	`jnl`	LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium. BioData Min. William S. Bush, Guanhua Chen, Eric Torstenson, Marylyn D. Ritchie
2008	J	`jnl`	Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinform. William S. Bush, Todd L. Edwards, Scott M. Dudek, Brett A. McKinney, Marylyn D. Ritchie
2008	—	`conf`	Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA. EvoBIO Todd L. Edwards, William S. Bush, Stephen D. Turner, Scott M. Dudek, Eric Torstenson, Mike Schmidt, Eden Martin, Marylyn D. Ritchie
2007	C	`conf`	Association Rule Discovery Has the Ability to Model Complex Genetic Effects. CIDM William S. Bush, Tricia A. Thornton-Wells, Marylyn D. Ritchie
2007	J	`jnl`	Circadian synchrony in networks of protein rhythm driven neurons. Complex. William S. Bush, Hava T. Siegelmann
2007	J	`jnl`	Genetic programming neural networks: A powerful bioinformatics tool for human genetics. Appl. Soft Comput. Marylyn D. Ritchie, Alison A. Motsinger, William S. Bush, Christopher S. Coffey, Jason H. Moore
2006	J	`jnl`	Circadian synchrony in networks of protein rhythm driven neurons. Complex. William S. Bush, Hava T. Siegelmann
2006	J	`jnl`	Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions. Bioinform. William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2005	—	`conf`	Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?. EvoWorkshops William S. Bush, Alison A. Motsinger, Scott M. Dudek, Marylyn D. Ritchie