William R. Hogan

120 papers A 1Misc 28Journal 58Unranked 32
YearRankTypeTitle / Venue / Authors
2026 J jnl
Multi-site analysis of COVID-19 and new-onset diabetes reveals need for improved sensitivity of EHR-based COVID-19 phenotypes - a DiCAYA Network analysis.
J. Am. Medical Informatics Assoc.
Lorna E. Thorpe, Jasmin Divers, Annemarie Hirsch, Brian S. Schwartz, Bo Cai, Jihad S. Obeid, Angela Liese, Tessa Crume, Anna Bellatorre, Jiang Bian, Yi Guo, Sarah Bost, Tianchen Lyu, Matthew T. Mefford, Matt Zhou, Eva Lustigova, Levon H. Utidjian, Mitchell Maltenfort, Patrick Hanley, Meda E. Pavkov, Marc B. Rosenman, Andrea R. Titus, Charles Bailey, Christopher B. Forrest, Levon Utidjian, Mitch Maltenfort, Amy Shah, Eneida A. Mendonça, G. Todd Alonso, Sara J. Deakyne Davies, H. Timothy Bunnell, Anne Kazak, Melody Kitzmiller, Manmohan Kamboj, Dimitri A. Christakis, Daksha Ranade, Annemarie G. Hirsch, Joseph J. Dewalle, H. Lester Kirchner, Meredith Lewis, Dione G. Mercer, Cara M. Nordberg, Amy Poissant, Brian E. Dixon, Shaun J. Grannis, Katie S. Allen, Anna Roberts, Nimish Valvi, Jeff Warvel, Ashley Wiensch, Tamara S. Hannon, Kristi Reynolds, John Chang, Don McCarthy, Rong Wei, Hui Zhou, Marc Rosenman, Lu Zhang, George Lales, Anthony Wong, Allison Zelinski, Yuan Luo, Mark Weiner, Pedro Rivera, Thomas Carton, Elizabeth Nauman, Harold P. Lehmann, Meredith Akerman, Rebecca Anthopolos, Stefanie Bendik, Sarah Conderino, Andrew Fair, Jessica Guillaume, Shahidul Islam, Alan Jacobson, David C. Lee, Chinyere Okpara, Anand Rajan, Andrea Titus, Dana Dabelea, Theresa Anderson, Rebecca Conway, Toan Ong, Jack Pattee, Shawna Burgett, Hui Shao, Elizabeth A. Shenkman, Sarah J. Bost, William T. Donahoo, William R. Hogan, Piaopiao Li, Mattia Prosperi, Yonghui Wu, Angela D. Liese, Lisa Knight, Caroline Rudisill, Jessica Stucker, Deborah Bowlby, Elaine Apperson, Alex Ewing, Giuseppina Imperatore, Deborah Rolka, Hui Xie, Ibrahim Zaganjor
2025 — conf
Generation of Interactive Knowledge Graphs to Enable Research of the Effects of Trauma Center Organization on Patient Outcomes.
KGSWC
Emma Chappell, Justin M. Whorton, Adrià A. Villafranca, Reza Shahriari, Scott C. Brakenridge, Judy L. Bennett, Songthip T. Ounpraseuth, Eric D. Ragan, William R. Hogan, Jonathan P. Bona, Kevin W. Sexton, Mathias Brochhausen
2024 — conf
Concretizing Plan Specifications as Realizables Within the OBO Foundry.
ICBO
William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley
2024 J jnl
Concretizing plan specifications as realizables within the OBO foundry.
J. Biomed. Semant.
William D. Duncan, Matthew Diller, Damion M. Dooley, William R. Hogan, John Beverley
2024 — conf
Credentials in the Occupation Ontology.
ICBO
John Beverley, Robin McGill, Sam Smith, Jie Zheng, Giacomo De Colle, Finn D. Wilson, Matthew Diller, William D. Duncan, William R. Hogan, Yongqun He
2024 J jnl
Credentials in the Occupation Ontology.
CoRR
John Beverley, Robin McGill, Sam Smith, Jie Zheng, Giacomo De Colle, Finn D. Wilson, Matthew Diller, William D. Duncan, William R. Hogan, Yongqun He
2024 — conf
Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems.
ICBO
Diya Mehta, Justin M. Whorton, Reza Shahriari, Eric D. Ragan, Jonathan P. Bona, William R. Hogan, Kevin W. Sexton, Mathias Brochhausen
2024 J jnl
Exploring the Relation between Contextual Social Determinants of Health and COVID-19 Occurrence and Hospitalization.
Informatics
Aokun Chen, Yunpeng Zhao, Yi Zheng, Hui Hu, Xia Hu, Jennifer N. Fishe, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian
2024 J jnl
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.
J. Biomed. Informatics
Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2024 J jnl
Towards Machine-FAIR: Representing software and datasets to facilitate reuse and scientific discovery by machines.
J. Biomed. Informatics
Michael M. Wagner, William R. Hogan, John D. Levander, Matthew Diller
2023 J jnl
A Study of Generative Large Language Model for Medical Research and Healthcare.
CoRR
Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth Shenkman, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
A study of generative large language model for medical research and healthcare.
npj Digit. Medicine
Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu
2023 J jnl
Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension.
CoRR
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
2023 J jnl
Clinical concept and relation extraction using prompt-based machine reading comprehension.
J. Am. Medical Informatics Assoc.
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
2023 J jnl
Creating a Discipline-specific Commons for Infectious Disease Epidemiology.
CoRR
Michael M. Wagner, William R. Hogan, John D. Levander, Adam Darr, Matt Diller, Max Sibilla, Alexander T. Loiacono, Terence Sperringer Jr., Shawn T. Brown
2023 J jnl
Ontology of language, with applications to demographic data.
Appl. Ontology
S. Clint Dowland, Barry Smith, Matthew Diller, Jobst Landgrebe, William R. Hogan
2023 — conf
The Occupation Ontology (OccO): Building a Bridge between Global Occupational Standards.
JOWO
John Beverley, Sam Smith, Matthew Diller, William D. Duncan, Jie Zheng, John W. Judkins, William R. Hogan, Robin McGill, Damion M. Dooley, Yongqun He
2023 J jnl
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records.
J. Am. Medical Informatics Assoc.
Piaopiao Li, Tianchen Lyu, Khalid Alkhuzam, Eliot Spector, William T. Donahoo, Sarah Bost, Yonghui Wu, William R. Hogan, Mattia Prosperi, Desmond A. Schatz, Mark A. Atkinson, Michael J. Haller, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Hui Shao
2022 J jnl
A large language model for electronic health records.
npj Digit. Medicine
Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
2022 J jnl
A scoping review of semantic integration of health data and information.
Int. J. Medical Informatics
Hansi Zhang, Tianchen Lyu, Pengfei Yin, Sarah Bost, Xing He, Yi Guo, Mattia Prosperi, William R. Hogan, Jiang Bian
2022 — conf
An Ontological Representation of Money with a View Toward Economic Determinants of Health.
ICBO
Matthew Diller, William R. Hogan
2022 J jnl
GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records.
CoRR
Xi Yang, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
2022 — conf
Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data.
ICHI
Zehao Yu, Xi Yang, Yiqing Chen, Ruogu Fang, William R. Hogan, Yan Gong, Yonghui Wu
2022 Misc conf
Impacts of Eligibility Criteria on Trial Participants' Age in Alzheimer's Disease Clinical Trials.
AMIA
Aokun Chen, Qian Li, Xing He, Michael Jaffee, William R. Hogan, Fei Wang, Yi Guo, Jiang Bian
2022 — conf
Integration of Biobanking Architecture with Genomics Data: Genomics Integrated Biobanking Ontology (GIBO).
ICIMTH
Nitya Singh, Naomi Braun, William R. Hogan, Mathias Brochhausen
2022 J jnl
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Database J. Biol. Databases Curation
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, HyeongSik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
2022 J jnl
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies.
CoRR
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, HyeongSik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
2022 J jnl
Phenotype clustering in health care: A narrative review for clinicians.
Frontiers Artif. Intell.
Tyler J. Loftus, Benjamin Shickel, Jeremy A. Balch, Patrick James Tighe, Kenneth L. Abbott, Brian Fazzone, Erik M. Anderson, Jared Rozowsky, Tezcan Ozrazgat-Baslanti, Yuanfang Ren, Scott A. Berceli, William R. Hogan, Philip A. Efron, J. Randall Moorman, Parisa Rashidi, Gilbert R. Upchurch Jr., Azra Bihorac
2022 J jnl
SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2022 J jnl
The OneFlorida Data Trust: a centralized, translational research data infrastructure of statewide scope.
J. Am. Medical Informatics Assoc.
William R. Hogan, Elizabeth A. Shenkman, Temple Robinson, Olveen Carasquillo, Patricia S. Robinson, Rebecca Z. Essner, Jiang Bian, Gigi Lipori, Christopher A. Harle, Tanja Magoc, Lizabeth Manini, Tona Mendoza, Sonya White, Alex Loiacono, Jackie Hall, Dave Nelson
2022 — conf
Using Ontologies to Enhance Data on Intimate Partner Violence.
ICBO
S. Clint Dowland, William R. Hogan
2021 Misc conf
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
AMIA
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
CoRR
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
2021 J jnl
Applications of artificial intelligence in drug development using real-world data.
CoRR
Zhaoyi Chen, Xiong Liu, William R. Hogan, Elizabeth Shenkman, Jiang Bian
2021 Misc conf
Developing an Ontology for Social and Behavioral Determinants of Health.
AMIA
Hansi Zhang, Xi Yang, Thomas J. George, William R. Hogan, Jiang Bian, Yonghui Wu
2021 J jnl
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease.
npj Digit. Medicine
Zhaoyi Chen, Hansi Zhang, Yi Guo, Thomas J. George, Mattia Prosperi, William R. Hogan, Zhe He, Elizabeth A. Shenkman, Fei Wang, Jiang Bian
2021 J jnl
Extracting social determinants of health from electronic health records using natural language processing: a systematic review.
J. Am. Medical Informatics Assoc.
Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
2020 J jnl
A realism-based approach to an ontological representation of symbiotic interactions.
BMC Medical Informatics Decis. Mak.
Matthew Diller, Evan Johnson, Amanda Hicks, William R. Hogan
2020 J jnl
Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data.
J. Am. Medical Informatics Assoc.
Jiang Bian, Tianchen Lyu, Alexander T. Loiacono, Tonatiuh Mendoza Viramontes, Gloria P. Lipori, Yi Guo, Yonghui Wu, Mattia Prosperi, Thomas J. George, Christopher A. Harle, Elizabeth A. Shenkman, William R. Hogan
2020 J jnl
Clinical concept extraction using transformers.
J. Am. Medical Informatics Assoc.
Xi Yang, Jiang Bian, William R. Hogan, Yonghui Wu
2020 Misc conf
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.
AMIA
Yi Guo, Xing He, Tianchen Lyu, Hansi Zhang, Yonghui Wu, Xi Yang, Zhaoyi Chen, Merry J. Markham, François Modave, Mengjun Xie, William R. Hogan, Christopher A. Harle, Elizabeth Shenkman, Jiang Bian
2020 J jnl
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.
J. Am. Medical Informatics Assoc.
Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu
2020 J jnl
Predicting in-hospital mortality of patients with febrile neutropenia using machine learning models.
Int. J. Medical Informatics
Xinsong Du, Jae Min, Chintan P. Shah, Rohit Bishnoi, William R. Hogan, Dominick J. Lemas
2019 — conf
A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings.
ICHI
Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
2019 J jnl
A study of deep learning methods for de-identification of clinical notes in cross-institute settings.
BMC Medical Informatics Decis. Mak.
Xi Yang, Tianchen Lyu, Qian Li, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
2019 Misc conf
Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study.
AMIA
Qian Li, Zhe He, Yi Guo, Hansi Zhang, Thomas J. George, William R. Hogan, Neil Charness, Jiang Bian
2019 J jnl
Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers.
BMC Bioinform.
Jonathan P. Bona, Mathias Brochhausen, William R. Hogan
2019 Misc conf
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods.
AMIA
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
2019 J jnl
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods.
CoRR
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
2018 Misc conf
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition.
AMIA
Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan
2018 Misc conf
Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.
AMIA
Hansi Zhang, Zhe He, Xing He, Yi Guo, David R. Nelson, François Modave, Yonghui Wu, William R. Hogan, Mattia Prosperi, Jiang Bian
2018 Misc conf
Introducing Hypertension FACT: Vital Sign Ontology Annotations in the Florida Annotated Corpus for Translational Science.
FLAIRS
Amanda Hicks, William R. Hogan, Carl Pepine, Nathan Boire, Chloe Herring, Selja Seppälä
2018 J jnl
OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system.
BMC Medical Informatics Decis. Mak.
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian
2017 Misc conf
Building an Obesity and Cancer Semantic Web Knowledge Base.
AMIA
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Yi Guo, Zhe He, Mirela Vasconcelos, Jiang Bian
2017 Misc conf
Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus.
AMIA
Zhe He, Arturo Gonzalez-Izquierdo, Spiros C. Denaxas, Andrei Sura, Yi Guo, William R. Hogan, Elizabeth Shenkman, Jiang Bian
2017 Misc conf
Implementing a Hash-based Privacy-Preserving Entity Resolution Tool in the OneFlorida Clinical Data Research Network.
AMIA
Jiang Bian, Andrei Sura, Gloria P. Lipori, Yi Guo, François Modave, Zhe He, Elizabeth Shenkman, William R. Hogan
2017 — conf
OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base.
BIBM
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Amanda Hicks, Jiang Bian
2017 — conf
Ontology of Cancer Related Social-Ecological Variables.
ICBO
Dharani K. Balasubramanian, Jamillah Z. Khan, Jiang Bian, Yi Guo, William R. Hogan, Amanda Hicks
2017 — conf
That Which we Call a Pediatrician Would by Any Other Name a Child Treat (or not).
ICBO
Amanda Hicks, William R. Hogan
2017 J jnl
The Building Blocks of Inter-operability.
Appl. Clin. Inform.
Adam Culbertson, Satyender Goel, Margaret B. Madden, Niloufar Safaeinili, Kathryn L. Jackson, Thomas Carton, Russ Waitman, Mei Liu, Ashok Krishnamurthy, Lauren Hall, Nickie Cappella, Shyam Visweswaran, Michael J. Becich, Reuben J. Applegate, Elmer V. Bernstam, Russell Rothman, Michael E. Matheny, Gloria P. Lipori, Jiang Bian, William R. Hogan, Douglas S. Bell, Andrew Martin, Shaun J. Grannis, Jeffrey G. Klann, Rebecca Sutphen, Amy O'hara, Abel N. Kho
2017 J jnl
Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request.
J. Biomed. Semant.
William R. Hogan, Josh Hanna, Amanda Hicks, Samira Amirova, Baxter Bramblett, Matthew Diller, Rodel Enderez, Timothy Modzelewski, Mirela Vasconcelos, Chris Delcher
2017 J jnl
Towards a privacy preserving cohort discovery framework for clinical research networks.
J. Biomed. Informatics
Jiawei Yuan, Bradley A. Malin, François Modave, Yi Guo, William R. Hogan, Elizabeth Shenkman, Jiang Bian
2016 — conf
A Semantic Web Representation of Entire Populations.
ICBO/BioCreative
Daniel Welch, Amanda Hicks, Josh Hanna, William R. Hogan
2016 — conf
Adding Evidence Type Representation to DIDEO.
ICBO/BioCreative
Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce
2016 J jnl
An accurate and precise representation of drug ingredients.
J. Biomed. Semant.
Josh Hanna, Jiang Bian, William R. Hogan
2016 — conf
Assessing the comorbidity gap between clinical studies and prevalence in elderly patient populations.
BHI
Zhe He, Neil Charness, Jiang Bian, William R. Hogan
2016 J jnl
Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysis.
J. Biomed. Semant.
William R. Hogan, Werner Ceusters
2016 Misc conf
Examining Healthcare Utilization Patterns of Elderly and Middle-Aged Adults in the United States.
FLAIRS
Cilia E. Zayas, Zhe He, Jiawei Yuan, Mildred Maldonado-Molina, William R. Hogan, François Modave, Yi Guo, Jiang Bian
2016 J jnl
The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.
J. Biomed. Semant.
William R. Hogan, Michael M. Wagner, Mathias Brochhausen, John D. Levander, Shawn T. Brown, Nicholas Millett, Jay DePasse, Josh Hanna
2016 J jnl
The ontology of medically related social entities: recent developments.
J. Biomed. Semant.
Amanda Hicks, Josh Hanna, Daniel Welch, Mathias Brochhausen, William R. Hogan
2016 — conf
Towards an obesity-cancer knowledge base: Biomedical entity identification and relation detection.
BIBM
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Amanda Hicks, Josh Hanna, Yi Guo, Zhe He, Jiang Bian
2015 — conf
An ontological analysis of diagnostic assertions in electronic healthcare records.
ICBO
Werner Ceusters, William R. Hogan
2015 — conf
Formalizing Knowledge and Evidence about Potential Drug-drug Interactions.
BDM2I@ISWC
Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce
2015 Misc conf
Mining Twitter as a First Step toward Assessing the Adequacy of Gender Identification Terms on Intake Forms.
AMIA
Amanda Hicks, William R. Hogan, Michael W. Rutherford, Bradley A. Malin, Mengjun Xie, Christiane Fellbaum, Zhijun Yin, Daniel Fabbri, Josh Hanna, Jiang Bian
2015 — ed.
Proceedings of the 5th International Conference on Biomedical Ontology, ICBO 2014, Houston, Texas, USA, October 8-9, 2014.
ICBO
William R. Hogan, Sivaram Arabandi, Mathias Brochhausen
2014 — conf
A Novel Representation of Terms Related to Infectious Disease Epidemiology for Epidemic Modeling: The Apollo Structured Vocabulary and Pre-existing Representations.
ICBO
Mathias Brochhausen, William R. Hogan, John D. Levander, Shawn T. Brown, Nicholas Millett, Josh Hanna, Michael M. Wagner
2014 J jnl
Social network analysis of biomedical research collaboration networks in a CTSA institution.
J. Biomed. Informatics
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, Hari Eswaran, William R. Hogan
2013 — conf
A Demonstration of Entity Identity Information Management Applied to Demographic Data in a Referent Tracking System.
ICBO
Cheng Chen, Josh Hanna, John R. Talburt, Mathias Brochhausen, William R. Hogan
2013 Misc conf
Apollo: Giving application developers a single point of access to public health models using structured vocabularies and Web services.
AMIA
Michael M. Wagner, John D. Levander, Shawn T. Brown, William R. Hogan, Nicholas Millett, Josh Hanna
2013 — conf
Building a Drug Ontology based on RxNorm and Other Sources.
VDOS+DO@ICBO
Josh Hanna, Eric Joseph, Mathias Brochhausen, William R. Hogan
2013 J jnl
Building a drug ontology based on RxNorm and other sources.
J. Biomed. Semant.
Josh Hanna, Eric Joseph, Mathias Brochhausen, William R. Hogan
2013 J jnl
Developing a semantically rich ontology for the biobank-administration domain.
J. Biomed. Semant.
Mathias Brochhausen, Martin N. Fransson, Nitin Kanaskar, Mikael Eriksson, Roxana Merino-Martinez, Roger A. Hall, Loreana Norlin, Sanela Kjellqvist, Maria Hortlund, Umit Topaloglu, William R. Hogan, Jan-Eric Litton
2013 J jnl
Evidence of community structure in Biomedical Research Grant Collaborations.
J. Biomed. Informatics
Radhakrishnan Nagarajan, Alex T. Kalinka, William R. Hogan
2013 — conf
Maintaining the Drug Ontology: an Open-source, Structured Product Label API for the JVM.
VDOS+DO@ICBO
Roger A. Hall, Josh Hanna, William R. Hogan
2013 — conf
The Core Clinical Protocol Ontology (C2PO): A Realist Ontology for Representing the Recommendations within Clinical Guidelines.
MedInfo
Laura Slaughter, Mathias Brochhausen, William R. Hogan, Øystein Nytrø
2013 — conf
Towards a Consistent and Scientifically Accurate Drug Ontology.
ICBO
William R. Hogan, Josh Hanna, Eric Joseph, Mathias Brochhausen
2013 — conf
Understanding biomedicai research collaborations through social network analysis: A case study.
BIBM
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, William R. Hogan
2012 J jnl
Bayesian Biosurveillance of Disease Outbreaks
CoRR
Gregory F. Cooper, Denver Dash, John D. Levander, Weng-Keen Wong, William R. Hogan, Michael M. Wagner
2012 — conf
Simplifying MIREOT; a MIREOT Protege Plugin.
ISWC (Posters & Demos)
Josh Hanna, Chen Cheng, Alex Crow, Roger A. Hall, Jie Liu, Tejaswini Pendurthi, Trent Schmidt, Steven F. Jennings, Mathias Brochhausen, William R. Hogan
2011 J jnl
Natural Language Processing methods and systems for biomedical ontology learning.
J. Biomed. Informatics
Kaihong Liu, William R. Hogan, Rebecca S. Crowley
2011 — conf
Representing Local Identifiers in a Referent-Tracking System.
ICBO
William R. Hogan, Swetha Garimalla, Shariq A. Tariq, Werner Ceusters
2011 — conf
Representing the Reality Underlying Demographic Data.
ICBO
William R. Hogan, Swetha Garimalla, Shariq A. Tariq
2011 J jnl
Towards an ontological theory of substance intolerance and hypersensitivity.
J. Biomed. Informatics
William R. Hogan
2009 J jnl
Knowledge-based variable selection for learning rules from proteomic data.
BMC Bioinform.
Jonathan L. Lustgarten, Shyam Visweswaran, Robert P. Bowser, William R. Hogan, Vanathi Gopalakrishnan
2009 J jnl
Measuring the effect of commuting on the performance of the Bayesian Aerosol Release Detector.
BMC Medical Informatics Decis. Mak.
Aurel Cami, Garrick L. Wallstrom, William R. Hogan
2009 J jnl
Mining aggregates of over-the-counter products for syndromic surveillance.
Pattern Recognit. Lett.
Aurel Cami, Garrick L. Wallstrom, Ashley L. Fowlkes, Cathy A. Panozzo, William R. Hogan
2008 — conf
A Temporal Extension of the Bayesian Aerosol Release Detector.
BioSecure
Xiaohui Kong, Garrick L. Wallstrom, William R. Hogan
2008 J jnl
EPO-KB: a
Bioinform.
Jonathan L. Lustgarten, Chad Kimmel, Henrik Ryberg, William R. Hogan
2008 — conf
Integrating a Commuting Model with the Bayesian Aerosol Release Detector.
BioSecure
Aurel Cami, Garrick L. Wallstrom, William R. Hogan
2007 J jnl
Unsupervised clustering of over-the-counter healthcare products into product categories.
J. Biomed. Informatics
Garrick L. Wallstrom, William R. Hogan
2005 Misc conf
A Multivariate Procedure for Identifying Correlations between Diagnoses and Over-the-counter Products from Historical Datasets.
AMIA
Ran Li, Garrick L. Wallstrom, William R. Hogan
2005 J jnl
Algorithms for rapid outbreak detection: a research synthesis.
J. Biomed. Informatics
David L. Buckeridge, Howard S. Burkom, Murray Campbell, William R. Hogan, Andrew W. Moore
2005 Misc conf
An Evaluation of Three Policies for Updating Product Categories in the National Retail Data Monitor.
AMIA
William R. Hogan, Garrick L. Wallstrom, Michael M. Wagner
2004 — conf
Analysis of Web Access Logs for Surveillance of Influenza.
MedInfo
Heather A. Johnson, Michael M. Wagner, William R. Hogan, Wendy W. Chapman, Robert T. Olszewski, John N. Dowling, Gary Barnas
2004 A conf
Bayesian Biosurveillance of Disease Outbreaks.
UAI
Gregory F. Cooper, Denver Dash, John D. Levander, Weng-Keen Wong, William R. Hogan, Michael M. Wagner
2003 Misc conf
A Framework for Infection Control Surveillance Using Association Rules.
AMIA
Lili Ma, Fu-Chiang Tsui, William R. Hogan, Michael M. Wagner, Haobo Ma
2003 J jnl
Application of Information Technology: Design of a National Retail Data Monitor for Public Health Surveillance.
J. Am. Medical Informatics Assoc.
Michael M. Wagner, J. Michael Robinson, Fu-Chiang Tsui, Jeremy U. Espino, William R. Hogan
2003 Misc conf
Detection of Outbreaks from Time Series Data Using Wavelet Transform.
AMIA
Jun Zhang, Fu-Chiang Tsui, Michael M. Wagner, William R. Hogan
2003 Misc conf
Detection of Pediatric Respiratory and Gastrointestinal Outbreaks from Free-Text Chief Complaints.
AMIA
Oleg Ivanov, Per H. Gesteland, William R. Hogan, Michael B. Mundorff, Michael M. Wagner
2003 J jnl
Research Paper: Detection of Pediatric Respiratory and Diarrheal Outbreaks from Sales of Over-the-counter Electrolyte Products.
J. Am. Medical Informatics Assoc.
William R. Hogan, Fu-Chiang Tsui, Oleg Ivanov, Per H. Gesteland, Shaun J. Grannis, J. Marc Overhage, J. Michael Robinson, Michael M. Wagner
2003 Misc conf
Telephone Triage: A Timely Data Source for Surveillance of Influenza-like Diseases.
AMIA
Jeremy U. Espino, William R. Hogan, Michael M. Wagner
2002 Misc conf
Experience with Message Format and Code Set Standards for Early Warning Public Health Surveillance Systems.
AMIA
William R. Hogan, Michael M. Wagner, Fu-Chiang Tsui
1999 Misc conf
A feasibility study of two methods for end-user configuration of a clinical event monitor.
AMIA
Fu-Chiang Tsui, Michael M. Wagner, Wayne Wilbright, Aaron Tse, William R. Hogan
1999 Misc conf
The use of an explanation algorithm in a clinical event monitor.
AMIA
William R. Hogan, Michael M. Wagner
1998 Misc conf
Mobile workers in healthcare and their information needs: are 2-way pagers the answer?
AMIA
Stuart A. Eisenstadt, Michael M. Wagner, William R. Hogan, Marvin C. Pankaskie, Fu-Chiang Tsui, Wayne Wilbright
1998 Misc conf
Optimal use of communication channels in clinical event monitoring.
AMIA
William R. Hogan, Michael M. Wagner
1998 Misc conf
Preferences of interns and residents for E-mail, paging, or traditional methods for the delivery of different types of clinical information.
AMIA
Michael M. Wagner, Stuart A. Eisenstadt, William R. Hogan, Marvin C. Pankaskie
1997 Misc conf
Clinical event monitoring at the University of Pittsburgh.
AMIA
Michael M. Wagner, Marvin C. Pankaskie, William R. Hogan, Fu-Chiang Tsui, Stuart A. Eisenstadt, Eric Rodriguez, John K. Vries
1997 J jnl
Review: Accuracy of Data in Computer-based Patient Records.
J. Am. Medical Informatics Assoc.
William R. Hogan, Michael M. Wagner
1996 J jnl
Research Paper: The Accuracy of Medication Data in an Outpatient Electronic Medical Record.
J. Am. Medical Informatics Assoc.
Michael M. Wagner, William R. Hogan