William R. Cannon

26 papers A 3B 1C 3Misc 3Journal 12Unranked 4
YearRankTypeTitle / Venue / Authors
2025 — conf
ChemComp: A Compilation Framework for Computing with Chemical Reaction Networks.
ASP-DAC
Nicolas Bohm Agostini, Connah Johnson, William R. Cannon, Antonino Tumeo
2025 A conf
ChemComp: Compiling and Computing with Chemical Reaction Networks.
DATE
Nicolas Bohm Agostini, Connah G. M. Johnson, William R. Cannon, Antonino Tumeo
2025 J jnl
Redox poise in R. rubrum phototrophic growth drives large-scale changes in macromolecular pathways.
PLoS Comput. Biol.
William R. Cannon, Ethan King, Katherine A. Huening, Justin A. North
2024 — conf
Computing with a Chemical Reservoir.
ICRC
Connah G. M. Johnson, Nicolas Bohm Agostini, William R. Cannon, Antonino Tumeo
2019 J jnl
Integrating machine learning and multiscale modeling - perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.
npj Digit. Medicine
Mark S. Alber, Adrian Buganza Tepole, William R. Cannon, Suvranu De, Salvador Dura-Bernal, Krishna C. Garikipati, George E. Karniadakis, William W. Lytton, Paris Perdikaris, Linda R. Petzold, Ellen Kuhl
2012 Misc conf
Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation.
Pacific Symposium on Biocomputing
Alys Hugo, Douglas J. Baxter, William R. Cannon, Ananth Kalyanaraman, Gaurav Ramesh Kulkarni, Stephen J. Callister
2012 J jnl
pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs.
IEEE Trans. Parallel Distributed Syst.
Changjun Wu, Ananth Kalyanaraman, William R. Cannon
2011 J jnl
MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.
Bioinform.
Ananth Kalyanaraman, William R. Cannon, Benjamin Latt, Douglas J. Baxter
2010 B conf
A Scalable Parallel Algorithm for Large-Scale Protein Sequence Homology Detection.
ICPP
Changjun Wu, Ananth Kalyanaraman, William R. Cannon
2010 J jnl
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.
Bioinform.
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
2010 J jnl
Applications in Data-Intensive Computing.
Adv. Comput.
Anuj R. Shah, Joshua N. Adkins, Douglas J. Baxter, William R. Cannon, Daniel G. Chavarría-Miranda, Sutanay Choudhury, Ian Gorton, Deborah K. Gracio, Todd D. Halter, Navdeep Jaitly, John R. Johnson, Richard T. Kouzes, Matthew C. Macduff, Andrés Márquez, Matthew E. Monroe, Christopher S. Oehmen, William A. Pike, Chad Scherrer, Oreste Villa, Bobbie-Jo M. Webb-Robertson, Paul D. Whitney, Nino Zuljevic
2009 — conf
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data.
ICPP Workshops
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, William R. Cannon, Douglas J. Baxter
2009 J jnl
An analysis pipeline for the inference of protein-protein interaction networks.
Int. J. Data Min. Bioinform.
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley
2009 J jnl
Statistically appraising process quality of affinity isolation experiments.
Comput. Stat. Data Anal.
Julia L. Sharp, John J. Borkowski, Denise Schmoyer, Don Simone Daly, Samuel O. Purvine, William R. Cannon, Gregory B. Hurst
2008 J jnl
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.
Bioinform.
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
2007 J jnl
Current trends in computational inference from mass spectrometry-based proteomics.
Briefings Bioinform.
Bobbie-Jo M. Webb-Robertson, William R. Cannon
2007 C conf
SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction.
ICMLA
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, William R. Cannon
2007 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
William R. Cannon, Bobbie-Jo M. Webb-Robertson
2007 C conf
Support Vector Machine Classification of Probability Models and Peptide Features for Improved Peptide Identification from Shotgun Proteomics.
ICMLA
Bobbie-Jo M. Webb-Robertson, Christopher S. Oehmen, William R. Cannon
2006 A conf
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.
SC
Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker
2006 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Joshua N. Adkins, Deborah K. Gracio
2005 J jnl
Peptide identification via constrained multi-objective optimization: Pareto-based genetic algorithms.
Concurr. Comput. Pract. Exp.
Joël M. Malard, Alejandro Heredia-Langner, William R. Cannon, Ryan W. Mooney, Douglas J. Baxter
2004 A conf
Constrained De Novo Peptide Identification via Multi-Objective Optimization.
IPDPS
Joël M. Malard, Alejandro Heredia-Langner, Douglas J. Baxter, Kristin H. Jarman, William R. Cannon
2004 — conf
De Novo Analysis of Tandem Mass Spectrometry Data as a Non-Deterministic Optimization Problem.
METMBS
Alejandro Heredia-Langner, William R. Cannon, Kenneth D. Jarman, Kristin H. Jarman
2004 J jnl
Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
Bioinform.
Alejandro Heredia-Langner, William R. Cannon, Kenneth D. Jarman, Kristin H. Jarman
2003 C conf
A Model of Random Sequences for de novo Peptide Sequencing.
BIBE
Kenneth D. Jarman, William R. Cannon, Kristin H. Jarman, Alejandro Heredia-Langner