William Poole

11 papers B 1Misc 1Journal 9

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Pathspace Kalman Filters with Dynamic Process Uncertainty for Analyzing Time-course Data. CoRR Chaitra Agrahar, William Poole, Simone Bianco, Hana El-Samad
2023	J	`jnl`	Autonomous Learning of Generative Models with Chemical Reaction Network Ensembles. CoRR William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan
2023	J	`jnl`	Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape. J. Open Source Softw. Ayush Pandey, William Poole, Anandh Swaminathan, Victoria Hsiao, Richard M. Murray
2022	J	`jnl`	BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts. PLoS Comput. Biol. William Poole, Ayush Pandey, Andrey Shur, Zoltán A. Tuza, Richard M. Murray
2022	J	`jnl`	Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines. CoRR William Poole, Thomas E. Ouldridge, Manoj Gopalkrishnan, Erik Winfree
2022	J	`jnl`	In vitro convolutional neural networks. Nat. Mach. Intell. William Poole
2022	J	`jnl`	Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. Eran Agmon, Ryan K. Spangler, Christopher J. Skalnik, William Poole, Shayn M. Peirce, Jerry H. Morrison, Markus W. Covert
2017	B	`conf`	Chemical Boltzmann Machines. DNA William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree, Manoj Gopalkrishnan
2017	J	`jnl`	Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression. PLoS Comput. Biol. William Poole, Kalle Leinonen, Ilya Shmulevich, Theo A. Knijnenburg, Brady Bernard
2016	J	`jnl`	Combining dependent Bioinform. William Poole, David L. Gibbs, Ilya Shmulevich, Brady Bernard, Theo A. Knijnenburg
2005	Misc	`conf`	Agent-based simulation for software project planning. WSC David Joslin, William Poole