Wenbin Ye

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2024 J jnl
vizAPA: visualizing dynamics of alternative polyadenylation from bulk and single-cell data.
Bioinform.
Xingyu Bi, Wenbin Ye, Xin Cheng, Ning Yang, Xiaohui Wu
2023 J jnl
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq.
Genom. Proteom. Bioinform.
Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
2023 J jnl
MEDIPIPE: an automated and comprehensive pipeline for cfMeDIP-seq data quality control and analysis.
Bioinform.
Yong Zeng, Wenbin Ye, Eric Y. Stutheit-Zhao, Ming Han, Scott V. Bratman, Trevor J. Pugh, Housheng H. He
2022 J jnl
scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution.
Nucleic Acids Res.
Sheng Zhu, Qiwei Lian, Wenbin Ye, Wei Qin, Zhe Wu, Guoli Ji, Xiaohui Wu
2021 J jnl
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering.
Briefings Bioinform.
Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin
2021 J jnl
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
Bioinform.
Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu
2021 J jnl
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data.
Briefings Bioinform.
Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji
2020 J jnl
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.
Briefings Bioinform.
Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu
2020 J jnl
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size.
Bioinform.
Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu
2019 J jnl
AStrap: identification of alternative splicing from transcript sequences without a reference genome.
Bioinform.
Guoli Ji, Wenbin Ye, Yaru Su, Moliang Chen, Guangzao Huang, Xiaohui Wu
2018 J jnl
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.
Bioinform.
Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu
2017 J jnl
PAcluster: Clustering polyadenylation site data using canonical correlation analysis.
J. Bioinform. Comput. Biol.
Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu