Weizhong Li

24 papers B 1Journal 21Unranked 2
YearRankTypeTitle / Venue / Authors
2019 — conf
DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences.
BIBM
Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu
2019 J jnl
Gclust: A Parallel Clustering Tool for Microbial Genomic Data.
Genom. Proteom. Bioinform.
Ruilin Li, Xiaoyu He, Chuangchuang Dai, Haidong Zhu, Xianyu Lang, Wei Chen, Xiaodong Li, Dan Zhao, Yu Zhang, Xinyin Han, Tie Niu, Yi Zhao, Rongqiang Cao, Rong He, Zhonghua Lu, Xuebin Chi, Weizhong Li, Beifang Niu
2014 J jnl
Big Data Applications Using Workflows for Data Parallel Computing.
Comput. Sci. Eng.
Jianwu Wang, Daniel Crawl, Ilkay Altintas, Weizhong Li
2013 J jnl
MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.
Bioinform.
Zhengwei Zhu, Beifang Niu, Jing Chen, Sitao Wu, Shulei Sun, Weizhong Li
2012 J jnl
CD-HIT: accelerated for clustering the next-generation sequencing data.
Bioinform.
LiMin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li
2012 — conf
Challenges and approaches for distributed workflow-driven analysis of large-scale biological data: vision paper.
EDBT/ICDT Workshops
Ilkay Altintas, Jianwu Wang, Daniel Crawl, Weizhong Li
2012 J jnl
Ultrafast clustering algorithms for metagenomic sequence analysis.
Briefings Bioinform.
Weizhong Li, LiMin Fu, Beifang Niu, Sitao Wu, John C. Wooley
2011 J jnl
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.
Nucleic Acids Res.
Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel W. Lin, Steven Peltier, Karen I. Stocks, Eric E. Allen, Mark H. Ellisman, Jeffrey S. Grethe, John C. Wooley
2011 J jnl
FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.
Bioinform.
Beifang Niu, Zhengwei Zhu, LiMin Fu, Sitao Wu, Weizhong Li
2010 J jnl
Artificial and natural duplicates in pyrosequencing reads of metagenomic data.
BMC Bioinform.
Beifang Niu, LiMin Fu, Shulei Sun, Weizhong Li
2010 B conf
CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows.
SERVICES
Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman
2010 J jnl
CD-HIT Suite: a web server for clustering and comparing biological sequences.
Bioinform.
Ying Huang, Beifang Niu, Ying Gao, LiMin Fu, Weizhong Li
2010 J jnl
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.
PLoS Comput. Biol.
Kyle Ellrott, Lukasz Jaroszewski, Weizhong Li, John C. Wooley, Adam Godzik
2009 J jnl
Analysis and comparison of very large metagenomes with fast clustering and functional annotation.
BMC Bioinform.
Weizhong Li
2009 J jnl
Identification of ribosomal RNA genes in metagenomic fragments.
Bioinform.
Ying Huang, Paul Gilna, Weizhong Li
2008 J jnl
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.
BMC Bioinform.
Shibu Yooseph, Weizhong Li, Granger G. Sutton
2006 J jnl
A Fast Clustering Algorithm for Analyzing Highly Similar Compounds of Very Large Libraries.
J. Chem. Inf. Model.
Weizhong Li
2006 J jnl
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
Bioinform.
Weizhong Li, Adam Godzik
2006 J jnl
VISSA: a program to visualize structural features from structure sequence alignment.
Bioinform.
Weizhong Li, Adam Godzik
2005 J jnl
FFAS03: a server for profile-profile sequence alignments.
Nucleic Acids Res.
Lukasz Jaroszewski, Leszek Rychlewski, Zhanwen Li, Weizhong Li, Adam Godzik
2003 J jnl
A segment alignment approach to protein comparison.
Bioinform.
Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, Adam Godzik
2002 J jnl
Tolerating some redundancy significantly speeds up clustering of large protein databases.
Bioinform.
Weizhong Li, Lukasz Jaroszewski, Adam Godzik
2001 J jnl
Clustering of highly homologous sequences to reduce the size of large protein databases.
Bioinform.
Weizhong Li, Lukasz Jaroszewski, Adam Godzik
2000 J jnl
Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.
Bioinform.
Weizhong Li, Frederic Pio, Krzysztof Pawlowski, Adam Godzik