Weiliang Zhu - RankMe

53 papers A 1B 4Journal 45Unranked 3

Year	Rank	Type	Title / Venue / Authors
2025	A	`conf`	GHO-WBC: A Gradient-Based Hierarchical Kinematic Optimization Approach to Enhance the Reachability of a Humanoid Robot. IROS Weiliang Zhu, Guoteng Zhang, Liaochao Qiao, Ligang Ge, Yibin Li
2024	J	`jnl`	A Heuristics-Based Reinforcement Learning Method to Control Bipedal Robots. Int. J. Humanoid Robotics Daoling Qin, Guoteng Zhang, Zhengguo Zhu, Teng Chen, Weiliang Zhu, Xuewen Rong, Anhuan Xie, Yibin Li
2024	J	`jnl`	D3EGFR: a webserver for deep learning-guided drug sensitivity prediction and drug response information retrieval for EGFR mutation-driven lung cancer. Briefings Bioinform. Yulong Shi, Chongwu Li, Xinben Zhang, Cheng Peng, Peng Sun, Qian Zhang, Leilei Wu, Ying Ding, Dong Xie, Zhijian Xu, Weiliang Zhu
2024	J	`jnl`	D3Rings: A Fast and Accurate Method for Ring System Identification and Deep Generation of Drug-Like Cyclic Compounds. J. Chem. Inf. Model. Minfei Ma, Xinben Zhang, Liping Zhou, Zijian Han, Yulong Shi, Jintian Li, Leyun Wu, Zhijian Xu, Weiliang Zhu
2024	J	`jnl`	Unexpected effect of halogenation on the water solubility of small organic compounds. Comput. Biol. Medicine Jianfang Zhang, Kinga Virág Gulyás, Jintian Li, Minfei Ma, Liping Zhou, Leyun Wu, Ruisheng Xiong, Mate Erdelyi, Weiliang Zhu, Zhijian Xu
2023	J	`jnl`	D3CARP: a comprehensive platform with multiple-conformation based docking, ligand similarity search and deep learning approaches for target prediction and virtual screening. Comput. Biol. Medicine Yulong Shi, Xinben Zhang, Yanqing Yang, Tingting Cai, Cheng Peng, Leyun Wu, Liping Zhou, Jiaxin Han, Minfei Ma, Weiliang Zhu, Zhijian Xu
2023	J	`jnl`	Design and control of BRAVER: a bipedal robot actuated via proprioceptive electric motors. Auton. Robots Zhengguo Zhu, Weiliang Zhu, Guoteng Zhang, Teng Chen, Yibin Li, Xuewen Rong, Rui Song, Daoling Qin, Qiang Hua, Shugen Ma
2023	J	`jnl`	Molecular dynamics study on the behavior and binding mechanism of target protein Transgelin-2 with its agonist TSG12 for anti-asthma drug discovery. Comput. Biol. Medicine Leyun Wu, Guangpu Wang, Liping Zhou, Mengxia Mo, Yulong Shi, Bo Li, Leimiao Yin, Qiang Zhao, Yongqing Yang, Chengkun Wu, Zhijian Xu, Weiliang Zhu
2022	J	`jnl`	Conserved protein targets for developing pan-coronavirus drugs based on sequence and 3D structure similarity analyses. Comput. Biol. Medicine Minfei Ma, Yanqing Yang, Leyun Wu, Liping Zhou, Yulong Shi, Jiaxin Han, Zhijian Xu, Weiliang Zhu
2022	J	`jnl`	D3AI-CoV: a deep learning platform for predicting drug targets and for virtual screening against COVID-19. Briefings Bioinform. Yanqing Yang, Deshan Zhou, Xinben Zhang, Yulong Shi, Jiaxin Han, Liping Zhou, Leyun Wu, Minfei Ma, Jintian Li, Shaoliang Peng, Zhijian Xu, Weiliang Zhu
2022	J	`jnl`	D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2. Comput. Biol. Medicine Jiaxin Han, Tingting Liu, Xinben Zhang, Yanqing Yang, Yulong Shi, Jintian Li, Minfei Ma, Weiliang Zhu, Likun Gong, Zhijian Xu
2022	J	`jnl`	D3PM: a comprehensive database for protein motions ranging from residue to domain. BMC Bioinform. Cheng Peng, Xinben Zhang, Zhijian Xu, Zhaoqiang Chen, Yanqing Yang, Tingting Cai, Weiliang Zhu
2022	J	`jnl`	Exploring the Binding Affinity and Mechanism between ACE2 and the Trimers of Delta and Omicron Spike Proteins by Molecular Dynamics Simulation and Bioassay. J. Chem. Inf. Model. Liping Zhou, Tingting Liu, Mengxia Mo, Yulong Shi, Leyun Wu, Yishui Li, Qiuping Qin, Weiliang Zhu, Chengkun Wu, Likun Gong, Zhijian Xu
2022	J	`jnl`	Exploring the immune evasion of SARS-CoV-2 variant harboring E484K by molecular dynamics simulations. Briefings Bioinform. Leyun Wu, Cheng Peng, Yanqing Yang, Yulong Shi, Liping Zhou, Zhijian Xu, Weiliang Zhu
2021	J	`jnl`	D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity. J. Chem. Inf. Model. Xiaoyu Wang, Xinben Zhang, Cheng Peng, Yulong Shi, Huiyu Li, Zhijian Xu, Weiliang Zhu
2021	—	`conf`	Design of BRAVER - a bipedal robot actuated via proprioceptive electric motor. ROBIO Weiliang Zhu, Zhengguo Zhu, Xuewen Rong, Yibin Li, Guoteng Zhang
2021	—	`conf`	Highly Dynamic Bipedal Locomotion via an Improved Virtual Model Algorithm. ROBIO Zhengguo Zhu, Weiliang Zhu, Zhongkai Sun, Yibin Li, Xuewen Rong, Guoteng Zhang
2021	J	`jnl`	Ligand-based approach for predicting drug targets and for virtual screening against COVID-19. Briefings Bioinform. Yanqing Yang, Zhengdan Zhu, Xiaoyu Wang, Xinben Zhang, Kaijie Mu, Yulong Shi, Cheng Peng, Zhijian Xu, Weiliang Zhu
2020	J	`jnl`	Accurate prediction of relative binding affinities of a series of HIV-1 protease inhibitors using semi-empirical quantum mechanical charge. J. Comput. Chem. Cheng Peng, Jinan Wang, Zhijian Xu, Tingting Cai, Weiliang Zhu
2020	J	`jnl`	Discovery of New and Potent InhA Inhibitors as Antituberculosis Agents: Structure-Based Virtual Screening Validated by Biological Assays and X-ray Crystallography. J. Chem. Inf. Model. Pharit Kamsri, Chayanin Hanwarinroj, Naruedon Phusi, Thimpika Pornprom, Kampanart Chayajarus, Auradee Punkvang, Nitima Suttipanta, Potjanee Srimanote, Khomson Suttisintong, Chomphunuch Songsiriritthigul, Patchreenart Saparpakorn, Supa Hannongbua, Siriluk Rattanabunyong, Supaporn Seetaha, Kiattawee Choowongkomon, Sanya Sureram, Prasat Kittakoop, Poonpilas Hongmanee, Pitak Santanirand, Zhaoqiang Chen, Weiliang Zhu, Rosemary A. Blood, Yuiko Takebayashi, Philip Hinchliffe, Adrian J. Mulholland, James Spencer, Pornpan Pungpo
2020	J	`jnl`	High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. Shaoliang Peng, Xiaoyu Zhang, Wenhe Su, Dong Dong, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei
2020	J	`jnl`	Interaction Nature and Computational Methods for Halogen Bonding: A Perspective. J. Chem. Inf. Model. Zhengdan Zhu, Zhijian Xu, Weiliang Zhu
2020	J	`jnl`	Substitution Effect of the Trifluoromethyl Group on the Bioactivity in Medicinal Chemistry: Statistical Analysis and Energy Calculations. J. Chem. Inf. Model. Amina Abula, Zhijian Xu, Zhengdan Zhu, Cheng Peng, Zhaoqiang Chen, Weiliang Zhu, Haji Akber Aisa
2019	J	`jnl`	D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics. J. Chem. Inf. Model. Zhaoqiang Chen, Xinben Zhang, Cheng Peng, Jinan Wang, Zhijian Xu, Kaixian Chen, Jiye Shi, Weiliang Zhu
2019	J	`jnl`	Underestimated Noncovalent Interactions in Protein Data Bank. J. Chem. Inf. Model. Zhijian Xu, Qian Zhang, Jiye Shi, Weiliang Zhu
2017	J	`jnl`	Combined Virtual Screening and Substructure Search for Discovery of Novel FABP4 Inhibitors. J. Chem. Inf. Model. Haiyan Cai, Ting Wang, Zhuo Yang, Zhijian Xu, Guimin Wang, He-Yao Wang, Weiliang Zhu, Kaixian Chen
2017	J	`jnl`	The Underestimated Halogen Bonds Forming with Protein Side Chains in Drug Discovery and Design. J. Chem. Inf. Model. Qian Zhang, Zhijian Xu, Weiliang Zhu
2017	J	`jnl`	Underestimated Halogen Bonds Forming with Protein Backbone in Protein Data Bank. J. Chem. Inf. Model. Qian Zhang, Zhijian Xu, Jiye Shi, Weiliang Zhu
2017	B	`conf`	mD3DOCKxb: An Ultra-Scalable CPU-MIC Coordinated Virtual Screening Framework. CCGrid Shaoliang Peng, Xiaoyu Zhang, Shunyun Yang, Wenhe Su, Zhiqiang Zhang, Dong Dong, Kai Lu, Yutong Lu, Xiangke Liao, Bertil Schmidt, Weiliang Zhu, Kuan-Ching Li
2016	—	`conf`	mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer. BIBM Shaoliang Peng, Xiaoyu Zhang, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei
2015	B	`conf`	A Method to Accelerate GROMACS in Offload Mode on Tianhe-2 Supercomputer. CCGRID Haiqiang Wang, Shaoliang Peng, Xiaoqian Zhu, Chengkun Wu, Xin Liu, Qian Chen, Weiliang Zhu, Jinan Wang, Huaiyu Yang
2015	B	`conf`	mAMBER: Accelerating Explicit Solvent Molecular Dynamic with Intel Xeon Phi Many-Integrated Core Coprocessors. CCGRID Xin Liu, Shaoliang Peng, Canqun Yang, Chengkun Wu, Haiqiang Wang, Qian Cheng, Weiliang Zhu, Jinan Wang
2015	B	`conf`	mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors. CCGRID Qian Cheng, Shaoliang Peng, Yutong Lu, Weiliang Zhu, Zhijian Xu, Xinben Zhang
2014	J	`jnl`	Algorithm and Its Implementation of Vehicle Safety Distance Control Based on the Numerical Simulation. J. Networks Jingguo Qu, Yuhuan Cui, Weiliang Zhu
2014	J	`jnl`	Estimation of acute oral toxicity in rat using local lazy learning. J. Cheminformatics Jing Lu, Jianlong Peng, Jinan Wang, Qiancheng Shen, Yi Bi, Likun Gong, Mingyue Zheng, Xiaomin Luo, Weiliang Zhu, Hualiang Jiang, Kaixian Chen
2014	J	`jnl`	Halogen Bond: Its Role beyond Drug-Target Binding Affinity for Drug Discovery and Development. J. Chem. Inf. Model. Zhijian Xu, Zhuo Yang, Yingtao Liu, Yunxiang Lu, Kaixian Chen, Weiliang Zhu
2014	J	`jnl`	The Study and Improvement of Unidimensional Search about Nonlinear Optimization. J. Networks Yuhuan Cui, Jingguo Qu, Weiliang Zhu
2013	J	`jnl`	A computational analysis of binding modes and conformation changes of MDM2 induced by p53 and inhibitor bindings. J. Comput. Aided Mol. Des. Jianzhong Chen, Jinan Wang, Weiliang Zhu, Guohui Li
2013	J	`jnl`	Discovery of Novel Acetohydroxyacid Synthase Inhibitors as Active Agents against J. Chem. Inf. Model. Di Wang, Xuelian Zhu, Changjun Cui, Mei Dong, Hualiang Jiang, Zhengming Li, Zhen Liu, Weiliang Zhu, Jianguo Wang
2012	J	`jnl`	Estimation of Carcinogenicity Using Molecular Fragments Tree. J. Chem. Inf. Model. Yong Wang, Jing Lu, Fei Wang, Qiancheng Shen, Mingyue Zheng, Xiaomin Luo, Weiliang Zhu, Hualiang Jiang, Kaixian Chen
2011	J	`jnl`	Computational Screening for Active Compounds Targeting Protein Sequences: Methodology and Experimental Validation. J. Chem. Inf. Model. Fei Wang, Dongxiang Liu, Heyao Wang, Cheng Luo, Mingyue Zheng, Hong Liu, Weiliang Zhu, Xiaomin Luo, Jian Zhang, Hualiang Jiang
2011	J	`jnl`	Knowledge-Based Scoring Functions in Drug Design: 2. Can the Knowledge Base Be Enriched? J. Chem. Inf. Model. Qiancheng Shen, Bing Xiong, Mingyue Zheng, Xiaomin Luo, Cheng Luo, Xian Liu, Yun Du, Jing Li, Weiliang Zhu, Jingkang Shen, Hualiang Jiang
2011	J	`jnl`	Knowledge-Based Scoring Functions in Drug Design: 3. A Two-Dimensional Knowledge-Based Hydrogen-Bonding Potential for the Prediction of Protein-Ligand Interactions. J. Chem. Inf. Model. Mingyue Zheng, Bing Xiong, Cheng Luo, Shanshan Li, Xian Liu, Qiancheng Shen, Jing Li, Weiliang Zhu, Xiaomin Luo, Hualiang Jiang
2010	J	`jnl`	Multiple Pharmacophore Models Combined with Molecular Docking: A Reliable Way for Efficiently Identifying Novel PDE4 Inhibitors with High Structural Diversity. J. Chem. Inf. Model. Zhi Chen, Guanghui Tian, Zhen Wang, Hualiang Jiang, Jingshan Shen, Weiliang Zhu
2009	J	`jnl`	Site of metabolism prediction for six biotransformations mediated by cytochromes P450. Bioinform. Mingyue Zheng, Xiaomin Luo, Qiancheng Shen, Yong Wang, Yun Du, Weiliang Zhu, Hualiang Jiang
2008	J	`jnl`	An Improved PMF Scoring Function for Universally Predicting the Interactions of a Ligand with Protein, DNA, and RNA. J. Chem. Inf. Model. Xiaoyu Zhao, Xiaofeng Liu, Yuanyuan Wang, Zhi Chen, Ling Kang, Hailei Zhang, Xiaomin Luo, Weiliang Zhu, Kaixian Chen, Honglin Li, Xicheng Wang, Hualiang Jiang
2008	J	`jnl`	PDTD: a web-accessible protein database for drug target identification. BMC Bioinform. Zhenting Gao, Honglin Li, Hailei Zhang, Xiaofeng Liu, Ling Kang, Xiaomin Luo, Weiliang Zhu, Kaixian Chen, Xicheng Wang, Hualiang Jiang
2007	J	`jnl`	Why does beta-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies. Comput. Biol. Chem. Zhili Zuo, Chen Gang, Hanjun Zou, Puah Chum Mok, Weiliang Zhu, Kaixian Chen, Hualiang Jiang
2006	J	`jnl`	Mutagenic probability estimation of chemical compounds by a novel molecular electrophilicity vector and support vector machine. Bioinform. Mingyue Zheng, Zhiguo Liu, Chunxia Xue, Weiliang Zhu, Kaixian Chen, Xiaomin Luo, Hualiang Jiang
2006	J	`jnl`	QSAR analyses on avian influenza virus neuraminidase inhibitors using CoMFA, CoMSIA, and HQSAR. J. Comput. Aided Mol. Des. Mingyue Zheng, Kunqian Yu, Hong Liu, Xiaomin Luo, Kaixian Chen, Weiliang Zhu, Hualiang Jiang
2006	J	`jnl`	TarFisDock: a web server for identifying drug targets with docking approach. Nucleic Acids Res. Honglin Li, Zhenting Gao, Ling Kang, Hailei Zhang, Kun Yang, Kunqian Yu, Xiaomin Luo, Weiliang Zhu, Kaixian Chen, Jianhua Shen, Xicheng Wang, Hualiang Jiang
2006	J	`jnl`	Towards discovering dual functional inhibitors against both wild type and K103N mutant HIV-1 reverse transcriptases: molecular docking and QSAR studies on 4, 1-benzoxazepinone analogues. J. Comput. Aided Mol. Des. Zhenshan Zhang, Mingyue Zheng, Li Du, Jianhua Shen, Xiaomin Luo, Weiliang Zhu, Hualiang Jiang
2005	J	`jnl`	A New Rapid and Effective Chemistry Space Filter in Recognizing a Druglike Database. J. Chem. Inf. Model. Suxin Zheng, Xiaomin Luo, Gang Chen, Weiliang Zhu, Jianhua Shen, Kaixian Chen, Hualiang Jiang