Weijie Chen

37 papers B 2Journal 10Unranked 25
YearRankTypeTitle / Venue / Authors
2025 J jnl
CoRR
Yee Lam Elim Thompson, Jonathan Fergus, Jonathan H. Chung, Jana G. Delfino, Weijie Chen, Gary M. Levine, Frank W. Samuelson
2025 conf
AIPR
Shuyue Guan, Weijie Chen
2024 J jnl
Queueing Syst. Theory Appl.
Yee Lam Elim Thompson, Gary M. Levine, Weijie Chen, Berkman Sahiner, Qin Li, Nicholas Petrick, Jana G. Delfino, Miguel A. Lago, Qian Cao, Frank W. Samuelson
2024 conf
SSIAI
Shuyue Guan, Ravi K. Samala, Seyed M. M. Kahaki, Weijie Chen
2023 conf
Digital and Computational Pathology
Arian Arab, Victor Garcia, Shuyue Guan, Brandon D. Gallas, Berkman Sahiner, Nicholas Petrick, Weijie Chen
2023 conf
Computer-Aided Diagnosis
Shuyue Guan, Ravi K. Samala, Arian Arab, Weijie Chen
2023 J jnl
IEEE Trans. Artif. Intell.
Weizhe Li, Mike Mikailov, Weijie Chen
2023 conf
Digital and Computational Pathology
Seyed M. M. Kahaki, Ian S. Hagemann, Kenny H. Cha, Christopher J. Trindade, Nicholas Petrick, Nicolas Kostelecky, Weijie Chen
2022 conf
AIPR
Shuyue Guan, Ravi K. Samala, Weijie Chen
2022 J jnl
CoRR
Shuyue Guan, Ravi K. Samala, Weijie Chen
2022 conf
Image Perception, Observer Performance, and Technology Assessment
Yee Lam Elim Thompson, Gary M. Levine, Weijie Chen, Berkman Sahiner, Qin Li, Nicholas Petrick, Frank W. Samuelson
2019 conf
Image Perception, Observer Performance, and Technology Assessment
Weijie Chen, Zhipeng Huang, Frank W. Samuelson, Lucas Tcheuko
2019 conf
Digital Pathology
Çaglar Senaras, M. Khalid Khan Niazi, Vidya Arole, Weijie Chen, Berkman Sahiner, Arwa Shana'ah, Abner Louissaint, Robert Paul Hasserjian, Gerard Lozanski, Metin Nafi Gürcan
2018 conf
Image Perception, Observer Performance, and Technology Assessment
Yang Yang, Berkman Sahiner, Zhipeng Huang, Nicholas Petrick, Weijie Chen
2018 conf
Image Perception, Observer Performance, and Technology Assessment
Weijie Chen, Qi Gong, Brandon D. Gallas
2018 conf
Digital Pathology
Çaglar Senaras, Michael Pennell, Weijie Chen, Berkman Sahiner, Arwa Shana'ah, Abner Louissaint, Robert Paul Hasserjian, Gerard Lozanski, Metin Nafi Gürcan
2017 conf
Digital Pathology
Çaglar Senaras, Michael Pennell, Weijie Chen, Berkman Sahiner, Arwa Shana'ah, Abner Louissaint, Robert Paul Hasserjian, Gerard Lozanski, Metin Nafi Gürcan
2017 J jnl
IEEE Trans. Medical Imaging
Aria Pezeshk, Nicholas Petrick, Weijie Chen, Berkman Sahiner
2016 conf
Image Perception, Observer Performance, and Technology Assessment
Brandon D. Gallas, Amrita Anam, Weijie Chen, Adam Wunderlich, Zhiwei Zhang
2016 conf
Image Perception, Observer Performance, and Technology Assessment
Berkman Sahiner, Weijie Chen, Aria Pezeshk, Nicholas Petrick
2015 J jnl
BMC Medical Informatics Decis. Mak.
Mohammad Faizal Ahmad Fauzi, Michael Pennell, Berkman Sahiner, Weijie Chen, Arwa Shana'ah, Jessica Hemminger, Alejandro Gru, Habibe Kurt, Michael Losos, Amy Joehlin-Price, Christina Kavran, Stephen M. Smith, Nicholas Nowacki, Sharmeen Mansor, Gerard Lozanski, Metin N. Gurcan
2015 conf
Computer-Aided Diagnosis
Aria Pezeshk, Berkman Sahiner, Weijie Chen, Nicholas Petrick
2015 J jnl
IEEE Trans. Biomed. Eng.
Aria Pezeshk, Berkman Sahiner, Rongping Zeng, Adam Wunderlich, Weijie Chen, Nicholas Petrick
2014 conf
Computer-Aided Diagnosis
Aria Pezeshk, Berkman Sahiner, Rongping Zeng, Adam Wunderlich, Weijie Chen, Nicholas Petrick
2013 conf
Computer-Aided Diagnosis
Berkman Sahiner, Xin He, Weijie Chen, Heang-Ping Chan, Lubomir M. Hadjiiski, Nicholas Petrick
2012 J jnl
Pattern Recognit.
Weijie Chen, Brandon D. Gallas, Waleed A. Yousef
2012 J jnl
Comput. Stat. Data Anal.
Weijie Chen, Waleed A. Yousef, Brandon D. Gallas, Elizabeth R. Hsu, Samir Lababidi, Rong Tang, Gene A. Pennello, W. Fraser Symmans, Lajos Pusztai
2010 J jnl
IEEE Trans. Medical Imaging
Weijie Chen, Charles E. Metz, Maryellen L. Giger, Karen Drukker
2010 conf
Computer-Aided Diagnosis
Weijie Chen, Brandon D. Gallas
2008 conf
Computer-Aided Diagnosis
Weijie Chen, Charles E. Metz, Maryellen L. Giger
2007 conf
Computer-Aided Diagnosis
Li Lan, Maryellen L. Giger, Joel R. Wilkie, Tamara J. Vokes, Weijie Chen, Hui Li, Tracy Lyons, Michael R. Chinander, Ann Pham
2007 conf
Computer-Aided Diagnosis
Weijie Chen, Richard M. Zur, Maryellen L. Giger
2007 conf
ISBI
Maryellen L. Giger, Yading Yuan, Hui Li, Karen Drukker, Weijie Chen, Li Lan, Karla Horsch
2006 B conf
Image Processing
Weijie Chen, Maryellen L. Giger
2004 conf
ISBI
Weijie Chen, Maryellen L. Giger
2004 B conf
Image Processing
Weijie Chen, Maryellen Lissak Giger, Ulrich Bick
2004 conf
CARS
Weijie Chen, Maryellen L. Giger, Gillian Newstead, Ulrich Bick, Li Lan
tests/unit/test_apk_cfg_features.py
← Index tests/unit/test_apk_cfg_features.py python
"""
Unit tests for APK CFG feature parity with the Binary Ninja pipeline.

Tests advanced CFG features computed from smali (topology hash, MD-index,
WL-MinHash, prime product, packed adjacency, block features export) and
the slimmed similarity table.

All tests use mocked smali input — no JADX/apktool/Java required.
"""
import pytest

from redb.extractors.decompiler.apk.smali_cfg import (
    SmaliCFGMetrics,
    compute_cfg_metrics,
)
from redb.extractors.decompiler.apk.method_extractor import (
    SMALI_OP_PRIMES,
    compute_prime_product_smali,
    count_call_instructions,
)

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


# ===================================================================
# Sample smali bodies for testing
# ===================================================================

# Simple linear method: 3 instructions, 1 block
SMALI_LINEAR = """\
    const/4 v0, 0x0
    invoke-virtual {p0, v0}, Lcom/Foo;->bar(I)V
    return-void
"""

# Diamond CFG: if-else with two paths merging
SMALI_DIAMOND = """\
    const/4 v0, 0x1
    if-eqz v0, :cond_0
    invoke-virtual {p0}, Lcom/Foo;->pathA()V
    goto :goto_0
    :cond_0
    invoke-virtual {p0}, Lcom/Foo;->pathB()V
    :goto_0
    return-void
"""

# Loop: a back edge from goto to a label before it
SMALI_LOOP = """\
    const/4 v0, 0x0
    :loop_start
    add-int/lit8 v0, v0, 0x1
    if-lt v0, v1, :loop_start
    return-void
"""

# Multi-block with several invoke calls
SMALI_MULTI_CALL = """\
    invoke-virtual {p0}, Lcom/Foo;->a()V
    invoke-static {v0}, Lcom/Bar;->b(I)V
    invoke-direct {p0, v1}, Lcom/Baz;-><init>(I)V
    const/4 v0, 0x0
    return-void
"""


# ===================================================================
# TestSmaliCFGMetricsAdvanced — new fields in SmaliCFGMetrics
# ===================================================================

class TestSmaliCFGMetricsAdvanced:
    """Test that advanced CFG fields are populated by compute_cfg_metrics."""

    def test_topology_hash_is_bytes(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert isinstance(m.cfg_topology_hash, bytes)
        assert len(m.cfg_topology_hash) == 16

    def test_topology_hash_nonzero_for_multiblock(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert m.cfg_topology_hash != b'\x00' * 16

    def test_topology_hash_zero_for_empty(self):
        m = compute_cfg_metrics("")
        assert m.cfg_topology_hash == b'\x00' * 16

    def test_identical_cfg_same_topology_hash(self):
        """Two smali methods with the same CFG structure produce the same hash."""
        smali_a = """\
    const/4 v0, 0x1
    if-eqz v0, :cond_0
    const/4 v1, 0x2
    goto :goto_0
    :cond_0
    const/4 v1, 0x3
    :goto_0
    return-void
"""
        smali_b = """\
    const/4 v5, 0x9
    if-nez v5, :cond_0
    add-int v6, v5, v5
    goto :goto_0
    :cond_0
    sub-int v6, v5, v5
    :goto_0
    return-void
"""
        m_a = compute_cfg_metrics(smali_a)
        m_b = compute_cfg_metrics(smali_b)
        assert m_a.cfg_topology_hash == m_b.cfg_topology_hash

    def test_different_cfg_different_topology_hash(self):
        m_linear = compute_cfg_metrics(SMALI_LINEAR)
        m_diamond = compute_cfg_metrics(SMALI_DIAMOND)
        assert m_linear.cfg_topology_hash != m_diamond.cfg_topology_hash

    def test_md_index_topdown_nonzero(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert m.md_index_topdown != 0

    def test_md_index_bottomup_nonzero(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert m.md_index_bottomup != 0

    def test_md_index_zero_for_empty(self):
        m = compute_cfg_metrics("")
        assert m.md_index_topdown == 0
        assert m.md_index_bottomup == 0

    def test_wl_minhash_length(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert len(m.wl_minhash) == 128

    def test_wl_minhash_sentinel_for_empty(self):
        m = compute_cfg_metrics("")
        assert m.wl_minhash == [255] * 128

    def test_wl_minhash_values_are_uint8(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        for val in m.wl_minhash:
            assert 0 <= val <= 255

    def test_cfg_adjacency_nonempty_for_multiblock(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert len(m.cfg_adjacency) > 0

    def test_cfg_adjacency_empty_for_empty(self):
        m = compute_cfg_metrics("")
        assert m.cfg_adjacency == []

    def test_cfg_adjacency_packed_format(self):
        """Each entry should be (src << 16) | tgt."""
        m = compute_cfg_metrics(SMALI_DIAMOND)
        for edge in m.cfg_adjacency:
            assert isinstance(edge, int)
            src = edge >> 16
            tgt = edge & 0xFFFF
            assert src < m.block_count
            assert tgt < m.block_count

    def test_block_features_exported(self):
        m = compute_cfg_metrics(SMALI_DIAMOND)
        assert len(m.block_features) == m.block_count
        for bf in m.block_features:
            assert len(bf) == 8  # 7 categories + successor_count

    def test_cfg_feature_tlsh_none_for_small(self):
        """Small methods produce None (< 50 bytes of feature data)."""
        m = compute_cfg_metrics(SMALI_LINEAR)
        # Single-block linear method — too small for TLSH
        assert m.cfg_feature_tlsh is None

    def test_loop_count_with_back_edge(self):
        m = compute_cfg_metrics(SMALI_LOOP)
        assert m.loop_count >= 1


# ===================================================================
# TestPrimeProductSmali
# ===================================================================

class TestPrimeProductSmali:

    def test_empty_returns_zero(self):
        assert compute_prime_product_smali("") == 0

    def test_none_returns_zero(self):
        assert compute_prime_product_smali(None) == 0

    def test_known_computation(self):
        """Single invoke instruction → CALL category → prime 17."""
        smali = "    invoke-virtual {p0}, Lcom/Foo;->bar()V"
        assert compute_prime_product_smali(smali) == 17

    def test_two_instructions(self):
        """const (CONST→2) * invoke (CALL→17) = 34."""
        smali = """\
    const/4 v0, 0x0
    invoke-virtual {p0, v0}, Lcom/Foo;->bar(I)V
"""
        assert compute_prime_product_smali(smali) == 2 * 17

    def test_skips_directives_and_labels(self):
        """Directives, labels, and comments should be skipped."""
        smali = """\
.registers 2
.line 10
    :label
    # comment
    const/4 v0, 0x0
"""
        # Only const/4 → CONST → prime 2
        assert compute_prime_product_smali(smali) == 2

    def test_position_independent(self):
        """Reordering instructions produces the same product (multiplication is commutative)."""
        smali_a = """\
    add-int v0, v1, v2
    invoke-virtual {p0}, Lcom/Foo;->bar()V
"""
        smali_b = """\
    invoke-virtual {p0}, Lcom/Foo;->bar()V
    add-int v0, v1, v2
"""
        assert compute_prime_product_smali(smali_a) == compute_prime_product_smali(smali_b)

    def test_all_categories_have_primes(self):
        """Every category in SMALI_OP_PRIMES is a positive integer."""
        for cat, prime in SMALI_OP_PRIMES.items():
            assert isinstance(prime, int)
            assert prime >= 1

    def test_mod_2_64(self):
        """Result should be mod 2^64 (doesn't overflow)."""
        # A very long method — product stays within uint64
        smali = "\n".join(["    mul-int v0, v1, v2"] * 1000)
        result = compute_prime_product_smali(smali)
        assert 0 <= result < 2**64


# ===================================================================
# TestCallCount
# ===================================================================

class TestCallCount:

    def test_empty(self):
        assert count_call_instructions("") == 0

    def test_none(self):
        assert count_call_instructions(None) == 0

    def test_single_invoke(self):
        smali = "    invoke-virtual {p0}, Lcom/Foo;->bar()V"
        assert count_call_instructions(smali) == 1

    def test_multiple_invoke_types(self):
        assert count_call_instructions(SMALI_MULTI_CALL) == 3

    def test_non_invoke_not_counted(self):
        smali = """\
    const/4 v0, 0x0
    add-int v1, v0, v0
    return-void
"""
        assert count_call_instructions(smali) == 0


# ===================================================================
# TestSimilarityTableSlimmed
# ===================================================================

class TestSimilarityTableSlimmed:
    """Verify the similarity table no longer contains moved fields."""

    def test_export_similarity_no_block_count(self):
        """block_count should not be in similarity export columns."""
        from redb.extractors.decompiler.DecompileAPK import DecompileAPK
        from unittest.mock import MagicMock

        extractor = DecompileAPK.__new__(DecompileAPK)
        extractor.log = MagicMock()
        extractor.sha256 = "a" * 64
        extractor.sha1 = "b" * 40
        extractor.md5 = "c" * 32
        extractor.analysis_results = {
            "sha256": "a" * 64,
            "sha1": "b" * 40,
            "md5": "c" * 32,
            "similarity_metrics": [{
                "smali_method_hash": "d" * 64,
                "cyclomatic_complexity": 3,
                "ssdeep_smali": None,
                "tlsh_smali": None,
                "minhash": [1, 2, 3],
            }],
        }

        export = extractor.prepare_export_data("ClickHouseExporter")
        sim_cols = export["method_similarity_metrics"]["column_names"]
        assert "block_count" not in sim_cols
        assert "edge_count" not in sim_cols
        assert "loop_count" not in sim_cols
        assert "max_depth" not in sim_cols
        assert "max_fan_out" not in sim_cols
        # These should still be there
        assert "smali_method_hash" in sim_cols
        assert "ssdeep_smali" in sim_cols
        assert "minhash" in sim_cols
        # cyclomatic_complexity moved to cfg table
        assert "cyclomatic_complexity" not in sim_cols


# ===================================================================
# TestCFGTableExport
# ===================================================================

class TestCFGTableExport:
    """Verify the new CFG table is exported correctly."""

    def test_export_cfg_table_present(self):
        from redb.extractors.decompiler.DecompileAPK import DecompileAPK
        from unittest.mock import MagicMock

        extractor = DecompileAPK.__new__(DecompileAPK)
        extractor.log = MagicMock()
        extractor.analysis_results = {
            "sha256": "a" * 64,
            "sha1": "b" * 40,
            "md5": "c" * 32,
            "cfg": [{
                "smali_method_hash": "d" * 64,
                "cfg_topology_hash": b'\x01' * 16,
                "block_count": 4,
                "edge_count": 5,
                "instructions_count": 20,
                "call_count": 3,
                "cyclomatic_complexity": 3,
                "loop_count": 1,
                "max_depth": 2,
                "max_fan_out": 2,
                "md_index_topdown": 12345,
                "md_index_bottomup": 67890,
                "prime_product_smali": 999,
                "cfg_feature_tlsh": None,
                "wl_minhash": [0] * 128,
                "bb_features": [[10, 1, 0, 2, 1, 0, 0, 2]] * 4,
                "cfg_adjacency": [0x00010000, 0x00010002],
            }],
        }

        export = extractor.prepare_export_data("ClickHouseExporter")
        assert "cfg_methods" in export
        cfg_export = export["cfg_methods"]
        assert cfg_export["table"] == "code_apk_cfg_methods"
        assert len(cfg_export["data"]) == 1
        assert "cfg_topology_hash" in cfg_export["column_names"]
        assert "prime_product_smali" in cfg_export["column_names"]
        assert "wl_minhash" in cfg_export["column_names"]
        assert "bb_features" in cfg_export["column_names"]
        assert "cfg_adjacency" in cfg_export["column_names"]
        # Verify column count matches data width
        assert len(cfg_export["column_names"]) == len(cfg_export["data"][0])
        assert len(cfg_export["column_type_names"]) == len(cfg_export["data"][0])