Weihua Geng

23 papers Journal 22Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
A new boundary condition for the nonlinear Poisson-Boltzmann equation in electrostatic analysis of proteins.
J. Comput. Phys.
Sylvia Amihere, Yiming Ren, Weihua Geng, Shan Zhao
2024 J jnl
A DNN Biophysics Model with Topological and Electrostatic Features.
CoRR
Elyssa Sliheet, Md Abu Talha, Weihua Geng
2024 J jnl
Bridging Eulerian and Lagrangian Poisson-Boltzmann solvers by ESES.
J. Comput. Chem.
Sheik Ahmed Ullah, Xin Yang, Benjamin Jones, Shan Zhao, Weihua Geng, Guo-Wei Wei
2024 J jnl
Comparison of three matched interface and boundary (MIB) schemes for solving the nonlinear Poisson-Boltzmann equation.
Commun. Inf. Syst.
Yiming Ren, Sylvia Amihere, Weihua Geng, Shan Zhao
2024 J jnl
Optimized parallelization of boundary integral Poisson-Boltzmann solvers.
Comput. Phys. Commun.
Xin Yang, Elyssa Sliheet, Reece Iriye, Daniel R. Reynolds, Weihua Geng
2023 J jnl
A Cartesian FMM-accelerated Galerkin boundary integral Poisson-Boltzmann solver.
J. Comput. Phys.
Jiahui Chen, Johannes Tausch, Weihua Geng
2023 J jnl
Integral equation method for the 1D steady-state Poisson-Nernst-Planck equations.
CoRR
Zhen Chao, Weihua Geng, Robert Krasny
2022 J jnl
Benchmarking electrostatic free energy of the nonlinear Poisson-Boltzmann model for the Kirkwood sphere.
Commun. Inf. Syst.
Sylvia Amihere, Weihua Geng, Shan Zhao
2022 J jnl
Computing electrostatic binding energy with the TABI Poisson-Boltzmann solver.
Commun. Inf. Syst.
Leighton Wilson, Jingzhen Hu, Jiahui Chen, Robert Krasny, Weihua Geng
2021 J jnl
Cyclically parallelized treecode for fast computations of electrostatic interactions on molecular surfaces.
Comput. Phys. Commun.
Jiahui Chen, Weihua Geng, Daniel R. Reynolds
2021 J jnl
MLIMC: Machine learning-based implicit-solvent Monte Carlo.
CoRR
Jiahui Chen, Weihua Geng, Guo-Wei Wei
2021 J jnl
Regularization methods for the Poisson-Boltzmann equation: Comparison and accuracy recovery.
J. Comput. Phys.
Arum Lee, Weihua Geng, Shan Zhao
2018 J jnl
On preconditioning the treecode-accelerated boundary integral (TABI) Poisson-Boltzmann solver.
J. Comput. Phys.
Jiahui Chen, Weihua Geng
2018 J jnl
Role of combinatorial complexity in genetic networks.
Commun. Inf. Syst.
Weihua Geng, Xin Yang
2017 J jnl
A two-component Matched Interface and Boundary (MIB) regularization for charge singularity in implicit solvation.
J. Comput. Phys.
Weihua Geng, Shan Zhao
2015 — conf
Parallel Computing of the Adaptive N-Body Treecode Algorithm for Solving Boundary Integral Poisson-Boltzmann Equation.
HPCA (China)
Jiahui Chen, Weihua Geng
2013 J jnl
A GPU-accelerated Direct-sum Boundary Integral Poisson-Boltzmann Solver
CoRR
Weihua Geng, Ferosh Jacob
2013 J jnl
A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver.
Comput. Phys. Commun.
Weihua Geng, Ferosh Jacob
2013 J jnl
A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules.
J. Comput. Phys.
Weihua Geng, Robert Krasny
2013 J jnl
Parallel Higher-order Boundary Integral Electrostatics Computation on Molecular Surfaces with Curved Triangulation
CoRR
Weihua Geng
2013 J jnl
Parallel higher-order boundary integral electrostatics computation on molecular surfaces with curved triangulation.
J. Comput. Phys.
Weihua Geng
2011 J jnl
MIBPB: A software package for electrostatic analysis.
J. Comput. Chem.
Duan Chen, Zhan Chen, Changjun Chen, Weihua Geng, Guo-Wei Wei
2011 J jnl
Multiscale molecular dynamics using the matched interface and boundary method.
J. Comput. Phys.
Weihua Geng, Guo-Wei Wei