Weichuan Yu

88 papers A* 4B 1Journal 61Unranked 21
YearRankTypeTitle / Venue / Authors
2026 J jnl
RoBep: a region-oriented deep learning model for B-cell epitope prediction.
Bioinform.
Yitao Xu, Guanyun Wei, Jingying Zhou, Yuanhua Huang, Weichuan Yu, Zhixiang Lin, Ran Liu, Xiaodan Fan
2025 — conf
A Comparative Performance Study of Protein Structure Alignment Tools on Homology Detection with Biological Relevance.
BIBM
Zhuoyang Chen, Xuechen Zhang, Weichuan Yu, Qiong Luo
2025 J jnl
Time-series atlases of the rat brain after middle cerebral artery occlusion using FDG-PET images.
Comput. Biol. Medicine
Chenrui Li, Wuxian He, Xuechen Zhang, Hongtu Tang, Jia Li, Xiaoyan Shen, Huafeng Liu, Weichuan Yu
2025 J jnl
Using the coefficient of determination to identify injury regions after stroke in pre-clinical FDG-PET images.
Comput. Biol. Medicine
Wuxian He, Hongtu Tang, Jia Li, Xiaoyan Shen, Xuechen Zhang, Chenrui Li, Huafeng Liu, Weichuan Yu
2025 J jnl
epLSAP-Align: a non-sequential protein structural alignment solver with entropy-regularized partial linear sum assignment problem formulation.
Bioinform.
Xuechen Zhang, Zhuoyang Chen, Junyu Li, Qiong Luo, Longjun Wu, Weichuan Yu
2024 — conf
A Mixed Integer Linear Program for Post-translational Modification Characterization.
BIBM
Shengzhi Lai, Peize Zhao, Ning Li, Weichuan Yu
2024 J jnl
DCES-PA: Deformation-controllable elastic shape model for 3D bone proliferation analysis using hand HR-pQCT images.
Comput. Biol. Medicine
Xuechen Zhang, Isaac Cheng, Yingzhao Jin, Jiandong Shi, Chenrui Li, Jing-Hao Xue, Lai-Shan Tam, Weichuan Yu
2023 J jnl
Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images.
Comput. Medical Imaging Graph.
Xuechen Zhang, Isaac Cheng, Shaojun Liu, Chenrui Li, Jing-Hao Xue, Lai-Shan Tam, Weichuan Yu
2023 — conf
Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics.
BIBM
Shengzhi Lai, Ning Li, Weichuan Yu
2023 J jnl
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis.
BMC Bioinform.
Chen Zhou, Shuaijian Dai, Shengzhi Lai, Yuanqiao Lin, Xuechen Zhang, Ning Li, Weichuan Yu
2021 J jnl
Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jiaan Dai, Fengchao Yu, Chen Zhou, Weichuan Yu
2020 J jnl
Data imbalance in CRISPR off-target prediction.
Briefings Bioinform.
Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu
2019 J jnl
Xolik: finding cross-linked peptides with maximum paired scores in linear time.
Bioinform.
Jiaan Dai, Wei Jiang, Fengchao Yu, Weichuan Yu
2018 J jnl
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility.
Bioinform.
Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip
2017 J jnl
Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies.
Bioinform.
Wei Jiang, Weichuan Yu
2017 J jnl
What is the probability of replicating a statistically significant association in genome-wide association studies?
Briefings Bioinform.
Wei Jiang, Jing-Hao Xue, Weichuan Yu
2016 J jnl
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database.
BMC Bioinform.
Fengchao Yu, Ning Li, Weichuan Yu
2016 J jnl
Erratum to "On Feature Motion Decorrelation in Ultrasound Speckle Tracking".
IEEE Trans. Medical Imaging
Tianzhu Liang, Ling Sing Yung, Weichuan Yu
2016 — conf
FPGA implementation of the coupled filtering method.
BIBM
Chen Zhang, Tianzhu Liang, Philip K. T. Mok, Weichuan Yu
2016 — conf
GBOOST 2.0: A GPU-based tool for detecting gene-gene interactions with covariates adjustment in genome-wide association studies.
BIBM
Meng Wang, Wei Jiang, Ronald Ching Wan Ma, Weichuan Yu
2016 J jnl
Power estimation and sample size determination for replication studies of genome-wide association studies.
BMC Genom.
Wei Jiang, Weichuan Yu
2015 J jnl
PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies.
Bioinform.
Guangyuan Yang, Wei Jiang, Qiang Yang, Weichuan Yu
2014 J jnl
Low-Rank Modeling and Its Applications in Image Analysis.
CoRR
Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu
2014 J jnl
Low-Rank Modeling and Its Applications in Image Analysis.
ACM Comput. Surv.
Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu
2014 J jnl
Piecewise-constant and low-rank approximation for identification of recurrent copy number variations.
Bioinform.
Xiaowei Zhou, Jiming Liu, Xiang Wan, Weichuan Yu
2013 J jnl
A Combinatorial Perspective of the Protein Inference Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chao Yang, Zengyou He, Weichuan Yu
2013 A* conf
Active Contours with Group Similarity.
CVPR
Xiaowei Zhou, Xiaojie Huang, James S. Duncan, Weichuan Yu
2013 J jnl
HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiang Wan, Can Yang, Qiang Yang, Hongyu Zhao, Weichuan Yu
2013 J jnl
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation.
IEEE Trans. Pattern Anal. Mach. Intell.
Xiaowei Zhou, Can Yang, Weichuan Yu
2013 J jnl
Multisample aCGH Data Analysis via Total Variation and Spectral Regularization.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaowei Zhou, Can Yang, Xiang Wan, Hongyu Zhao, Weichuan Yu
2013 J jnl
On Feature Motion Decorrelation in Ultrasound Speckle Tracking.
IEEE Trans. Medical Imaging
Tianzhu Liang, Ling Sing Yung, Weichuan Yu
2012 A* conf
Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation.
CVPR
Xiaowei Zhou, Can Yang, Weichuan Yu
2012 J jnl
Comments on 'An empirical comparison of several recent epistatic interaction detection methods'.
Bioinform.
Xiang Wan, Can Yang, Weichuan Yu
2012 J jnl
Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering".
Comput. Electr. Eng.
Weichuan Yu, Zheng-Hua Tan, Yi Wan
2012 J jnl
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chao Yang, Zengyou He, Can Yang, Weichuan Yu
2012 J jnl
Protein inference: a review.
Briefings Bioinform.
Ting Huang, Jingjing Wang, Weichuan Yu, Zengyou He
2011 J jnl
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zengyou He, Can Yang, Weichuan Yu
2011 — conf
A brief review of signal processing issues in mass spectrometry-based proteomics studies.
ACSCC
Chao Yang, Weichuan Yu
2011 J jnl
A hidden two-locus disease association pattern in genome-wide association studies.
BMC Bioinform.
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
2011 J jnl
GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies.
Bioinform.
Ling Sing Yung, Can Yang, Xiang Wan, Weichuan Yu
2011 J jnl
Identifying disease-associated SNP clusters via contiguous outlier detection.
Bioinform.
Can Yang, Xiaowei Zhou, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
2011 J jnl
Motif-All: discovering all phosphorylation motifs.
BMC Bioinform.
Zengyou He, Can Yang, Guangyu Guo, Ning Li, Weichuan Yu
2011 J jnl
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation
CoRR
Xiaowei Zhou, Can Yang, Weichuan Yu
2011 J jnl
Score regularization for peptide identification.
BMC Bioinform.
Zengyou He, Hongyu Zhao, Weichuan Yu
2011 J jnl
The choice of null distributions for detecting gene-gene interactions in genome-wide association studies.
BMC Bioinform.
Can Yang, Xiang Wan, Zengyou He, Qiang Yang, Hong Xue, Weichuan Yu
2010 — conf
A coupled filtering method to solve feature-motion decorrelation in speckle tracking.
ISBI
Tianzhu Liang, Weichuan Yu
2010 — conf
Accurate segmentation of ultrasound images using the motion cue.
ISBI
Xiaowei Zhou, Tianzhu Liang, Weichuan Yu
2010 J jnl
BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies
CoRR
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Xiaodan Fan, Nelson L. S. Tang, Weichuan Yu
2010 J jnl
Detecting two-locus associations allowing for interactions in genome-wide association studies.
Bioinform.
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
2010 J jnl
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso.
BMC Bioinform.
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
2010 J jnl
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification.
J. Comput. Biol.
Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
2010 J jnl
Predictive rule inference for epistatic interaction detection in genome-wide association studies.
Bioinform.
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
2010 J jnl
Stable Feature Selection for Biomarker Discovery
CoRR
Zengyou He, Weichuan Yu
2010 J jnl
Stable feature selection for biomarker discovery.
Comput. Biol. Chem.
Zengyou He, Weichuan Yu
2010 — conf
SyncPro : A synchronized visualization tool for differential analysis of proteomics data sets.
BIBM Workshops
Ling Sing Yung, Chao Yang, Mohammed Dakna, Harald Mischak, Weichuan Yu
2009 J jnl
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis.
BMC Bioinform.
Chao Yang, Zengyou He, Weichuan Yu
2009 J jnl
Improving peptide identification with single-stage mass spectrum peaks.
Bioinform.
Zengyou He, Weichuan Yu
2009 J jnl
MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study.
BMC Bioinform.
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
2009 B conf
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification.
RECOMB
Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
2009 J jnl
SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies.
Bioinform.
Can Yang, Zengyou He, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
2009 J jnl
Semi-supervised protein subcellular localization.
BMC Bioinform.
Qian Xu, Derek Hao Hu, Hong Xue, Weichuan Yu, Qiang Yang
2008 J jnl
Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal?
J. Electr. Comput. Eng.
Junfeng Liu, Hongyu Zhao, Jun Tan, Dajie Luo, Weichuan Yu, E. James Harner, Weichung Joe Shih
2008 J jnl
Peak bagging for peptide mass fingerprinting.
Bioinform.
Zengyou He, Can Yang, Weichuan Yu
2007 J jnl
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry.
Comput. Biol. Chem.
Weichuan Yu, Junfeng Liu, Chris Colangelo, Erol E. Gulcicek, Hongyu Zhao
2006 J jnl
Detecting and aligning peaks in mass spectrometry data with applications to MALDI.
Comput. Biol. Chem.
Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Kenneth R. Williams, Hongyu Zhao
2006 J jnl
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao
2006 J jnl
Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking.
Medical Image Anal.
Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan
2005 — conf
Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach.
CSB Workshops
Weichuan Yu, Xiaoye Li, Hongyu Zhao
2005 J jnl
Using skew Gabor filter in source signal separation and local spectral orientation analysis.
Image Vis. Comput.
Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis, James S. Duncan
2004 — conf
Pointwise Motion Tracking in Echocardiographic Images.
CVPR (1)
Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan
2004 — conf
The Choice of Tracking Feature In Ultrasound-Based Strain Imaging Analysis.
ISBI
Weichuan Yu, James S. Duncan
2004 — conf
Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis.
CVPR (1)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
2003 J jnl
Combinative multi-scale level set framework for echocardiographic image segmentation.
Medical Image Anal.
Ning Lin, Weichuan Yu, James S. Duncan
2003 — conf
Motion Analysis of 3D Ultrasound Texture Patterns.
FIMH
Weichuan Yu, Ning Lin, Ping Yan, Kailasnath Purushothaman, Albert J. Sinusas, Karl Thiele, James S. Duncan
2003 J jnl
Multiple motion analysis: in spatial or in spectral domain?
Comput. Vis. Image Underst.
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
2003 J jnl
Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis.
Image Vis. Comput.
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
2002 — conf
Combinative Multi-scale Level Set Framework for Echocardiographic Image Segmentation.
MICCAI (1)
Ning Lin, Weichuan Yu, James S. Duncan
2002 J jnl
Oriented Structure of the Occlusion Distortion: Is It Reliable?
IEEE Trans. Pattern Anal. Mach. Intell.
Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis
2001 — conf
3D-Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis.
CVPR (1)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
2001 J jnl
Approximate orientation steerability based on angular Gaussians.
IEEE Trans. Image Process.
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
2001 — conf
Skewness of Gabor Wavelets and Source Signal Separation.
WAA
Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis
2000 — conf
A New 3D Orientation Steerable Filter.
DAGM-Symposium
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
2000 — conf
Eliminating Outliers in Motion Occlusion Analysis.
DAGM-Symposium
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
2000 — —
Local orientation analysis in images and image sequences using steerable filters.
Weichuan Yu
1999 A* conf
Detection and Characterization of Multiple Motion Points.
CVPR
Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis
1998 — conf
Junction Characterization Using Polar Pyramid.
DAGM-Symposium
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
1998 — conf
Low-Cost Junction Characterization using Polar Averaging Filters.
ICIP (3)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
1998 A* conf
Rotated Wedge Averaging Method for Junction Classification.
CVPR
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer