Wei Zhang

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data.
Genom. Proteom. Bioinform.
Wei Zhang, Xianglin Zhang, Qiao Liu, Lei Wei, Xu Qiao, Rui Gao, Zhiping Liu, Xiaowo Wang
2025 J jnl
Inferring cell-type-specific gene regulatory network from cellular transcriptomics data with GeneLink+.
Briefings Bioinform.
Wei Zhang, Bowen Shao, Wenrui Li, Wenbo Guo, Jiaxin Lyu, Guangyi Chen, Chuanyuan Wang, Zhi-Ping Liu
2025 J jnl
Simulation-guided pan-cancer analysis identifies a novel regulator of CpG island hypermethylation heterogeneity.
Briefings Bioinform.
Xianglin Zhang, Wei Zhang, Jinyi Zhang, Xiuhong Lyu, Haoran Pan, Tianwei Jia, Ting Wang, Xiaowo Wang, Haiyang Guo
2025 J jnl
soFusion: facilitating tissue structure identification via spatial multi-omics data fusion.
Briefings Bioinform.
Na Yu, Wenrui Li, Xue Sun, Jing Hu, Qi Zou, Zhiping Liu, Daoliang Zhang, Wei Zhang, Rui Gao
2024 J jnl
Spall: accurate and robust unveiling cellular landscapes from spatially resolved transcriptomics data using a decomposition network.
BMC Bioinform.
Zhongning Jiang, Wei Huang, Raymond H. W. Lam, Wei Zhang
2024 J jnl
Weakly Supervised Causal Discovery Based on Fuzzy Knowledge and Complex Data Complementarity.
IEEE Trans. Fuzzy Syst.
Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang
2024 J jnl
Weakly-supervised causal discovery based on fuzzy knowledge and complex data complementarity.
CoRR
Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang
2023 J jnl
Deep generative modeling and clustering of single cell Hi-C data.
Briefings Bioinform.
Qiao Liu, Wanwen Zeng, Wei Zhang, Sicheng Wang, Hongyang Chen, Rui Jiang, Mu Zhou, Shaoting Zhang
2022 J jnl
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Briefings Bioinform.
Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang
2022 J jnl
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.
Briefings Bioinform.
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
2021 J jnl
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Briefings Bioinform.
Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang
2021 J jnl
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
Bioinform.
Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang
2018 J jnl
esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis.
Bioinform.
Zheng Wei, Wei Zhang, Huan Fang, Yanda Li, Xiaowo Wang