Wei-Sheng Wu

34 papers B 1Journal 32Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments.
Database J. Biol. Databases Curation
Tzu-Hsien Yang, Xiang-Wei Li, Yuan-Han Lee, Shang-Yi Lu, Wei-Sheng Wu, Heng-Chi Lee
2024 J jnl
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies.
Comput. Methods Programs Biomed.
Tzu-Hsien Yang, Guan-Da Syu, Chien-Sheng Chen, Guan-Ru Chen, Song-En Jhong, Po-Heng Lin, Pei-Chun Lin, Yun-Cih Wang, Pramod Shah, Yan-Yuan Tseng, Wei-Sheng Wu
2024 J jnl
Identifying Human miRNA Target Sites via Learning the Interaction Patterns between miRNA and mRNA Segments.
J. Chem. Inf. Model.
Tzu-Hsien Yang, Jhih-Cheng Chen, Yuan-Han Lee, Shang-Yi Lu, Sheng-Hang Wu, Fang-Yuan Chang, Yan-Cheng Huang, Mei-Hsien Lee, Yan-Yuan Tseng, Wei-Sheng Wu
2022 J jnl
YMLA: A comparative platform to carry out functional enrichment analysis for multiple gene lists in yeast.
Comput. Biol. Medicine
Tzu-Hsien Yang, Chia-Wei Hsu, Yan-Xiang Wang, Chien-Hung Yu, Jagat Rathod, Yan-Yuan Tseng, Wei-Sheng Wu
2021 J jnl
A tool for analyzing and visualizing ribo-seq data at the isoform level.
BMC Bioinform.
Wei-Sheng Wu, Yi-Hong Tsao, Sheng-Cian Shiue, Ting-Yu Chen, Yan Yuan Tseng, Joseph T. Tseng
2021 J jnl
Identifying piRNA targets on mRNAs in C. elegans using a deep multi-head attention network.
BMC Bioinform.
Tzu-Hsien Yang, Sheng-Cian Shiue, Kuan-Yu Chen, Yan Yuan Tseng, Wei-Sheng Wu
2020 J jnl
YQFC: a web tool to compare quantitative biological features between two yeast gene lists.
Database J. Biol. Databases Curation
Wei-Sheng Wu, Lai-Ji Wang, Han-Chen Yen, Yan Yuan Tseng
2019 J jnl
piRTarBase: a database of piRNA targeting sites and their roles in gene regulation.
Nucleic Acids Res.
Wei-Sheng Wu, Jordan S. Brown, Tsung-Te Chen, Yu-Han Chu, Wei-Che Huang, Shikui Tu, Heng-Chi Lee
2018 J jnl
HRPDviewer: human ribosome profiling data viewer.
Database J. Biol. Databases Curation
Wei-Sheng Wu, Yu-Xuan Jiang, Jer-Wei Chang, Yu-Han Chu, Yi-Hao Chiu, Yi-Hong Tsao, Torbjörn E. M. Nordling, Yan Yuan Tseng, Joseph T. Tseng
2018 J jnl
YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast.
Database J. Biol. Databases Curation
Wei-Sheng Wu, Hao-Ping Tu, Yu-Han Chu, Torbjörn E. M. Nordling, Yan Yuan Tseng, Hung-Jiun Liaw
2018 J jnl
pirScan: a webserver to predict piRNA targeting sites and to avoid transgene silencing in C. elegans.
Nucleic Acids Res.
Wei-Sheng Wu, Wei-Che Huang, Jordan S. Brown, Donglei Zhang, Xiaoyan Song, Hao Chen, Shikui Tu, Zhiping Weng, Heng-Chi Lee
2017 J jnl
MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm.
BMC Bioinform.
Wei-Sheng Wu, Meng-Jhun Jhou
2017 J jnl
YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules.
Database J. Biol. Databases Curation
Wei-Sheng Wu, Pin-Han Chen, Tsung-Te Chen, Yan Yuan Tseng
2016 J jnl
CoopTFD: a repository for predicted yeast cooperative transcription factor pairs.
Database J. Biol. Databases Curation
Wei-Sheng Wu, Fu-Jou Lai, Bor-Wen Tu, Darby Tien-Hao Chang
2015 J jnl
PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast.
BMC Bioinform.
Fu-Jou Lai, Hong-Tsun Chang, Wei-Sheng Wu
2014 J jnl
A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms.
BMC Syst. Biol.
Fu-Jou Lai, Hong-Tsun Chang, Yueh-Min Huang, Wei-Sheng Wu
2014 J jnl
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae.
BMC Syst. Biol.
Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh, Darby Tien-Hao Chang
2014 — conf
IMDE: An easy-to-use web server for missing data estimation.
ICCA
Chia-Chun Chiu, Wei-Sheng Wu
2014 J jnl
Identifying cooperative transcription factors in yeast using multiple data sources.
BMC Syst. Biol.
Fu-Jou Lai, Mei-Huei Jhu, Chia-Chun Chiu, Yueh-Min Huang, Wei-Sheng Wu
2014 J jnl
Topologically associating domains are stable units of replication-timing regulation Open.
Nat.
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
2014 J jnl
YTRP: a repository for yeast transcriptional regulatory pathways.
Database J. Biol. Databases Curation
Tzu-Hsien Yang, Chung-Ching Wang, Yu-Chao Wang, Wei-Sheng Wu
2014 J jnl
cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.
BMC Syst. Biol.
Tzu-Hsien Yang, Chung-Ching Wang, Po-Cheng Hung, Wei-Sheng Wu
2014 J jnl
iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.
BMC Bioinform.
Tzu-Hsien Yang, Hong-Tsun Chang, Eric S. L. Hsiao, Juo-Ling Sun, Chung-Ching Wang, Hsin-Yi Wu, Pao-Chi Liao, Wei-Sheng Wu
2013 J jnl
Fuzzy Logic Applications in Control Theory and Systems Biology.
Adv. Fuzzy Syst.
Sendren Sheng-Dong Xu, Hao Ying, Pablo Carbonell, Ching-Hung Lee, Wei-Sheng Wu
2013 J jnl
Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data.
BMC Syst. Biol.
Tzu-Hsien Yang, Wei-Sheng Wu
2013 J jnl
Missing value imputation for microarray data: a comprehensive comparison study and a web tool.
BMC Syst. Biol.
Chia-Chun Chiu, Shih-Yao Chan, Chung-Ching Wang, Wei-Sheng Wu
2013 J jnl
Shrinkage regression-based methods for microarray missing value imputation.
BMC Syst. Biol.
Hsiuying Wang, Chia-Chun Chiu, Yi-Ching Wu, Wei-Sheng Wu
2012 J jnl
Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data.
BMC Syst. Biol.
Tzu-Hsien Yang, Wei-Sheng Wu
2011 J jnl
YPA: an integrated repository of promoter features in
Nucleic Acids Res.
Darby Tien-Hao Chang, Cheng-Yi Huang, Chi-Yeh Wu, Wei-Sheng Wu
2008 J jnl
Systematic identification of yeast cell cycle transcription factors using multiple data sources.
BMC Bioinform.
Wei-Sheng Wu, Wen-Hsiung Li
2007 J jnl
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.
BMC Bioinform.
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
2006 J jnl
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.
BMC Bioinform.
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
2006 B conf
Robust Filtering Circuit Design for Gene Networks under Intrinsic and Extrinsic Molecular Noises.
SMC
Bor-Sen Chen, Wei-Sheng Wu
2005 J jnl
A new measure of the robustness of biochemical networks.
Bioinform.
Bor-Sen Chen, Yu-Chao Wang, Wei-Sheng Wu, Wen-Hsiung Li