Wei-Mou Zheng

28 papers Journal 27Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Accurate and efficient protein sequence design through learning concise local environment of residues.
Bioinform.
Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu
2023 J jnl
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms.
Genom. Proteom. Bioinform.
Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu
2022 J jnl
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
J. Comput. Biol.
Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu
2022 J jnl
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
Bioinform.
Fusong Ju, Jianwei Zhu, Qi Zhang, Guozheng Wei, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2020 J jnl
ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
BMC Bioinform.
Qi Zhang, Jianwei Zhu, Fusong Ju, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling.
BMC Bioinform.
Chao Wang, Yi Wei, Haicang Zhang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Correction to: Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2019 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
BMC Bioinform.
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao, Ziwei Xie, Minghua Deng, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2018 J jnl
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning.
CoRR
Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Shiwei Sun, Yujuan Gao, Ziwei Xie, Minghua Deng, Wei-Mou Zheng, Dongbo Bu
2017 J jnl
Improving prediction of burial state of residues by exploiting correlation among residues.
BMC Bioinform.
Hai'e Gong, Haicang Zhang, Jianwei Zhu, Chao Wang, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2017 J jnl
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.
Bioinform.
Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu
2016 J jnl
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Bioinform.
Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning, Shiwei Sun, Shuai Cheng Li, Dongbo Bu
2015 J jnl
Loop-corrected belief propagation for lattice spin models.
CoRR
Hai-Jun Zhou, Wei-Mou Zheng
2014 J jnl
Self-organizing approach for meta-genomes.
Comput. Biol. Chem.
Jianfeng Zhu, Wei-Mou Zheng
2011 J jnl
Incorporating Ab Initio energy into threading approaches for protein structure prediction.
BMC Bioinform.
Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu
2009 J jnl
Counting of oligomers in Sequences Generated by Markov Chains for DNA Motif Discovery.
J. Bioinform. Comput. Biol.
Gao Shan, Wei-Mou Zheng
2008 J jnl
ClEPaps: Fast Pair Alignment of protein Structures Based on conformational Letters.
J. Bioinform. Comput. Biol.
Sheng Wang, Wei-Mou Zheng
2008 — conf
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures.
ISBRA
Wei-Mou Zheng
2007 J jnl
A cross-species alignment tool (
BMC Bioinform.
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Ka-Shu Wong, Jun Wang
2006 J jnl
An Amino Acid Substitution Matrix for Protein Conformation Identification.
J. Bioinform. Comput. Biol.
Xin Liu, Wei-Mou Zheng
2006 J jnl
DRTF: a database of rice transcription factors.
Bioinform.
Ge Gao, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Wei-Mou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo
2006 J jnl
TreeFam: a curated database of phylogenetic trees of animal gene families.
Nucleic Acids Res.
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir S. Dehal, Jun Wang, Richard Durbin
2005 J jnl
A Protein Structural Alphabet and Its Substitution Matrix CLESUM.
Trans. Comp. Sys. Biology
Wei-Mou Zheng, Xin Liu
2005 J jnl
Protein secondary structure prediction by combining hidden Markov models and sliding window scores.
Int. J. Bioinform. Res. Appl.
Wei-Mou Zheng
2005 J jnl
Relation between weight matrix and substitution matrix: motif search by similarity.
Bioinform.
Wei-Mou Zheng
2005 J jnl
Test Data Sets and Evaluation of Gene Prediction Programs on the Rice Genome.
J. Comput. Sci. Technol.
Heng Li, Jin-Song Liu, Zhao Xu, Jiao Jin, Lin Fang, Lei Gao, Yu-Dong Li, Zi-Xing Xing, Shao-Gen Gao, Tao Liu, Hai-Hong Li, Yan Li, Li-Jun Fang, Hui-Min Xie, Wei-Mou Zheng, Bailin Hao
2004 J jnl
Clustering of Amino Acids for Protein Secondary Structure Prediction.
J. Bioinform. Comput. Biol.
Wei-Mou Zheng
2004 J jnl
Prediction of Protein Secondary Structure Based on Residue Pairs.
J. Bioinform. Comput. Biol.
Xin Liu, Li-Mei Zhang, Wei-Mou Zheng
redb/extractors/decompiler/bninja/instruction_type.py
← Index redb/extractors/decompiler/bninja/instruction_type.py python 
from enum import Enum


class InstructionType(Enum):
    # Data Movement
    GENERAL_DATA_MOVEMENT = "GENERAL_DATA_MOVEMENT"  # mov, lea, xchg
    STACK_MANAGEMENT = "STACK_MANAGEMENT"  # push, pop, enter, leave
    STRING_MANIPULATION = "STRING_MANIPULATION"  # movs, lods, stos, cmps

    # Arithmetic
    BASIC_ARITHMETIC = "BASIC_ARITHMETIC"  # add, sub, inc, dec
    MULTIPLICATION_DIVISION = "MULTIPLICATION_DIVISION"  # mul, div, imul, idiv
    CARRY_ARITHMETIC = "CARRY_ARITHMETIC"  # adc, sbb

    # Logical
    BITWISE_LOGIC = "BITWISE_LOGIC"  # and, or, xor, not
    CONDITIONAL_LOGIC = "CONDITIONAL_LOGIC"  # test, cmp, setX

    # Control Flow
    UNCONDITIONAL_JUMP = "UNCONDITIONAL_JUMP"  # jmp
    CONDITIONAL_JUMP = "CONDITIONAL_JUMP"  # je, jne, jl, jg, etc
    FUNCTION_CONTROL = "FUNCTION_CONTROL"  # call, ret
    LOOPING = "LOOPING"  # loop, loopz, loopnz

    # System
    SYSTEM_CALLS = "SYSTEM_CALLS"  # syscall, int, sysenter
    PRIVILEGED_INSTRUCTIONS = "PRIVILEGED_INSTRUCTIONS"  # hlt, cli, sti
    CPU_FEATURES = "CPU_FEATURES"  # cpuid, rdtsc

    # SIMD & FPU
    SSE_SIMD = "SSE_SIMD"  # SSE instructions
    AVX_SIMD = "AVX_SIMD"  # AVX instructions
    BASIC_FPU = "BASIC_FPU"  # fld, fst, fstp
    FPU_ARITHMETIC = "FPU_ARITHMETIC"  # fadd, fsub, etc

    # Bit Operations
    SHIFT_ROTATE = "SHIFT_ROTATE"  # shl, shr, rol, ror
    BIT_TEST_MODIFY = "BIT_TEST_MODIFY"  # bt, bts, btr, btc

    # Special
    CRYPTOGRAPHIC_OPS = "CRYPTOGRAPHIC_OPS"  # aesenc, aesdec, sha1rnds4
    MISC_OPS = "MISC_OPS"