Wayne Pfeiffer

20 papers A 3C 1Journal 5Unranked 10
YearRankTypeTitle / Venue / Authors
2022 J jnl
Bioinform.
Dimitri Höhler, Wayne Pfeiffer, Vassilios Ioannidis, Heinz Stockinger, Alexandros Stamatakis
2021 conf
PEARC
Shawn Strande, Haisong Cai, Mahidhar Tatineni, Wayne Pfeiffer, Christopher Irving, Amit Majumdar, Dmitry Mishin, Robert S. Sinkovits, Mike Norman, Nicole Wolter, Trevor Cooper, Ilkay Altintas, Marty Kandes, Ismael Pérez, Manu Shantharam, Mary P. Thomas, Subhashini Sivagnanam, Thomas Hutton
2017 conf
PEARC
Shawn Strande, Haisong Cai, Trevor Cooper, Karen Flammer, Christopher Irving, Gregor von Laszewski, Amitava Majumdar, Dmitry Mishin, Philip M. Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Mahidhar Tatineni, Rick Wagner, Fugang Wang, Nancy Wilkins-Diehr, Nicole Wolter, Michael L. Norman
2017 conf
PEARC
Pietro Cicotti, Wayne Pfeiffer, Madhu Gujral, Robert S. Sinkovits, Shawn Strande, Ron Hawkins
2016 conf
XSEDE
Mark A. Miller, Terri Schwartz, Wayne Pfeiffer
2015 J jnl
BMC Bioinform.
Kristopher Standish, Tristan M. Carland, Glenn K. Lockwood, Wayne Pfeiffer, Mahidhar Tatineni, C. Huang, Sarah Lamberth, Yauheniya Cherkas, Carrie Brodmerkel, Ed Jaeger, Lance Smith, Gunaretnam Rajagopal, Mark Curran, Nicholas J. Schork
2014 conf
XSEDE
Richard Lee Moore, Chaitan Baru, Diane Baxter, Geoffrey Charles Fox, Amitava Majumdar, Philip M. Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Shawn Strande, Mahidhar Tatineni, Richard P. Wagner, Nancy Wilkins-Diehr, Michael L. Norman
2013 conf
XSEDE
Mark A. Miller, Terri Schwartz, Wayne Pfeiffer
2012 conf
XSEDE
Mark A. Miller, Wayne Pfeiffer, Terri Schwartz
2011 conf
TG
Mark A. Miller, Wayne Pfeiffer, Terri Schwartz
2011 conf
TG
Richard Lee Moore, David L. Hart, Wayne Pfeiffer, Mahidhar Tatineni, Kenneth Yoshimoto, William S. Young
2010 conf
IPDPS Workshops
Wayne Pfeiffer, Alexandros Stamatakis
2008 A conf
IPDPS
Wayne Pfeiffer, Nicholas J. Wright
2006 ch.
Parallel Processing for Scientific Computing
George S. Almási, Gyan Bhanot, Siddhartha Chatterjee, Alan Gara, John A. Gunnels, Manish Gupta, Amy Henning, José E. Moreira, James C. Sexton, Bob Walkup, Alessandro Curioni, Charles Archer, Leonardo R. Bachega, Bor Chan, Bruce Curtis, Sharon Brunett, Giri Chukkapalli, Robert Harkness, Wayne Pfeiffer
2006 C conf
CLUSTER
Phil Andrews, Chris Jordan, Wayne Pfeiffer
2004 A conf
IPDPS
Wayne Pfeiffer
1998 J jnl
Commun. ACM
Paul Messina, David E. Culler, Wayne Pfeiffer, William R. Martin, J. Tinsley Oden, Gary Smith
1994 A conf
SC
Steven Hotovy, Wayne Pfeiffer, Thomas L. Sterling
1990 J jnl
Concurr. Pract. Exp.
Paul Messina, Clive F. Baillie, Edward W. Felten, Paul G. Hipes, Ray Williams, Arnold Alagar, Anke Kamrath, Robert H. Leary, Wayne Pfeiffer, Jack M. Rogers, David W. Walker
1990 J jnl
J. Supercomput.
Wayne Pfeiffer, Arnold Alagar, Anke Kamrath, Robert H. Leary, Jack M. Rogers
tests/unit/test_decompile_medium_level.py
← Index tests/unit/test_decompile_medium_level.py python
# tests/unit/test_decompile_medium_level.py
"""Unit tests (mocked BN) for bninja/analysis/medium_level.py
   and bninja/analysis/medium_level_normalization.py."""
# tests/unit/test_decompile_medium_level.py
import sys
from unittest.mock import MagicMock, patch

# Installa gli stubs BN
from tests.unit.conftest_binja_stubs import install_binja_stubs
install_binja_stubs()

# ── Definisci MockMLILInstruction PRIMA di importare il modulo ──
class MockMLILInstruction:
    def __init__(self, operation, address=0, operands=None):
        self.operation = operation
        self.address = address
        self.operands = operands or []

# ── Patcha il modulo BN in modo che isinstance() funzioni ──
sys.modules["binaryninja"].MediumLevelILInstruction = MockMLILInstruction
sys.modules["binaryninja"].SSAVariable = type("SSAVariable", (), {})
sys.modules["binaryninja"].Variable = type("Variable", (), {})
sys.modules["binaryninja"].ILIntrinsic = type("ILIntrinsic", (), {})

# Ora importa il modulo — vede già i tipi corretti
from redb.extractors.decompiler.bninja.analysis.medium_level_normalization import (
    MediumLevelNormalization,
)	

class MockMLILFunction:
    def __init__(self, instructions):
        self._instructions = instructions

    @property
    def instructions(self):
        return iter(self._instructions)

    @property
    def basic_blocks(self):
        # one block containing all instructions, good enough for MinHasher
        block = MagicMock()
        block.__iter__ = lambda self_: iter([])  # not used by MediumLevelAnalysis
        return [block]


class MockFunction:
    def __init__(self, name="func", start=0x1000, mlil=None):
        self.name = name
        self.start = start
        self.mlil = mlil



class TestMediumLevelNormalization:
    def setup_method(self):
        from redb.extractors.decompiler.bninja.analysis.medium_level_normalization import (
            MediumLevelNormalization,
        )
        self.norm = MediumLevelNormalization()

    def test_normalize_skeleton_single_instruction(self):
        il = MockMLILInstruction(operation=42, operands=[])
        result = self.norm.normalize_instruction_all_levels(il)
        assert result == [42]

    def test_normalize_skeleton_nested(self):
        inner = MockMLILInstruction(operation=7, operands=[])
        outer = MockMLILInstruction(operation=1, operands=[inner])
        result = self.norm.normalize_instruction_all_levels(outer)
        assert result == [1, 7]

    def test_normalize_skeleton_with_list_operand(self):
        inner_a = MockMLILInstruction(operation=10, operands=[])
        inner_b = MockMLILInstruction(operation=11, operands=[])
        outer = MockMLILInstruction(operation=2, operands=[[inner_a, inner_b]])
        result = self.norm.normalize_instruction_all_levels(outer)
        assert result == [2, 10, 11]

    def test_normalize_skeleton_none(self):
        result = self.norm.normalize_instruction_all_levels(None)
        # collect on None should leave ops empty
        assert result == []

    def test_normalize_typed_appends_leaf_types(self):
        # operand is a plain int -> "CONST"
        il = MockMLILInstruction(operation=3, operands=[42])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [3, "CONST"]

    def test_normalize_typed_bool_before_int(self):
        # bool must be detected before int (since bool is an int subclass)
        il = MockMLILInstruction(operation=4, operands=[True])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [4, "BOOL"]

    def test_normalize_typed_float(self):
        il = MockMLILInstruction(operation=5, operands=[1.5])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [5, "FLOAT_CONST"]

    def test_normalize_typed_str(self):
        il = MockMLILInstruction(operation=6, operands=["hello"])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [6, "STR"]

    def test_normalize_typed_unknown_falls_back_to_typename(self):
        class Weird:
            pass
        il = MockMLILInstruction(operation=8, operands=[Weird()])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [8, "WEIRD"]

    def test_normalize_typed_nested_mlil(self):
        inner = MockMLILInstruction(operation=99, operands=[7])
        outer = MockMLILInstruction(operation=1, operands=[inner])
        result = self.norm.normalize_instr_with_operands(outer)
        assert result == [1, 99, "CONST"]

    def test_normalize_typed_list_mixed(self):
        inner = MockMLILInstruction(operation=50, operands=[])
        il = MockMLILInstruction(operation=2, operands=[[inner, 99]])
        result = self.norm.normalize_instr_with_operands(il)
        assert result == [2, 50, "CONST"]


class TestMediumLevelAnalysis:
    def _make_analysis(self, instructions=None, mlil=True, start=0x1000):
        from redb.extractors.decompiler.bninja.analysis.medium_level import (
            MediumLevelAnalysis,
        )
        mlil_func = MockMLILFunction(instructions or []) if mlil else None
        func = MockFunction(name="testfunc", start=start, mlil=mlil_func)
        bv = MagicMock()
        return MediumLevelAnalysis(func, bv, MagicMock())

    def test_collect_returns_empty_when_no_mlil(self):
        a = self._make_analysis(mlil=False)
        sk, sk_addr, ty, ty_addr = a._collect_mlil_skeleton_and_typed()
        assert sk == [] and sk_addr == [] and ty == [] and ty_addr == []

    def test_collect_skeleton_and_typed_basic(self):
        instrs = [
            MockMLILInstruction(operation=1, address=0x1000, operands=[]),
            MockMLILInstruction(operation=2, address=0x1004, operands=[42]),
        ]
        a = self._make_analysis(instructions=instrs, start=0x1000)
        sk, sk_addr, ty, ty_addr = a._collect_mlil_skeleton_and_typed()

        assert sk == [[1], [2]]
        assert ty == [[1], [2, "CONST"]]
        assert sk_addr == [(0, [1]), (4, [2])]
        assert ty_addr == [(0, [1]), (4, [2, "CONST"])]

    def test_collect_negative_offset_clamped_to_zero(self):
        instrs = [
            MockMLILInstruction(operation=1, address=0x900, operands=[]),
        ]
        a = self._make_analysis(instructions=instrs, start=0x1000)
        _, sk_addr, _, ty_addr = a._collect_mlil_skeleton_and_typed()
        assert sk_addr[0][0] == 0
        assert ty_addr[0][0] == 0

    def test_log_error_records_entry(self):
        a = self._make_analysis()
        a.log_error("boom", "fname", 0x1234, ValueError("x"), "loc")
        assert len(a.errors) == 1
        err = a.errors[0]
        assert err["function_name"] == "fname"
        assert err["function_address"] == "4660"  # hex 0x1234
        assert err["error_location"] == "loc"
        assert err["error_message"] == "boom"
        assert err["error_type"] == "ValueError"
        assert "timestamp" in err

    @patch(
        "redb.extractors.decompiler.bninja.analysis.medium_level.MinHasher"
    )
    def test_analyze_returns_expected_keys(self, mock_minhasher):
        mock_minhasher.return_value.calculateMinHash.return_value = [1, 2, 3]

        instrs = [
            MockMLILInstruction(operation=1, address=0x1000, operands=[]),
            MockMLILInstruction(operation=2, address=0x1004, operands=[42]),
            MockMLILInstruction(operation=3, address=0x1008, operands=[]),
        ]
        a = self._make_analysis(instructions=instrs, start=0x1000)
        result, errors = a.analyze()

        expected_keys = {
            "function_address",
            "body_mlil_skeleton_vector",
            "sha256_mlil_skeleton",
            "tlsh_mlil_skeleton",
            "minhash_mlil_skeleton",
            "body_mlil_typed_vector",
            "sha256_mlil_typed",
            "tlsh_mlil_typed",
            "minhash_mlil_typed",
        }
        assert set(result.keys()) == expected_keys
        assert result["function_address"] == 0x1000
        assert result["minhash_mlil_skeleton"] == [1, 2, 3]
        assert result["minhash_mlil_typed"] == [1, 2, 3]
        assert errors == []

    @patch(
        "redb.extractors.decompiler.bninja.analysis.medium_level.MinHasher"
    )
    def test_analyze_empty_mlil(self, mock_minhasher):
        mock_minhasher.return_value.calculateMinHash.return_value = []
        a = self._make_analysis(mlil=False)
        result, errors = a.analyze()
        assert result["body_mlil_skeleton_vector"] == []
        assert result["body_mlil_typed_vector"] == []
        assert errors == []

    @patch(
        "redb.extractors.decompiler.bninja.analysis.medium_level.MinHasher"
    )
    def test_analyze_sha256_differs_skeleton_vs_typed(self, mock_minhasher):
        mock_minhasher.return_value.calculateMinHash.return_value = []

        instrs = [
            MockMLILInstruction(operation=1, address=0x1000, operands=[42]),
            MockMLILInstruction(operation=2, address=0x1004, operands=["foo"]),
            MockMLILInstruction(operation=3, address=0x1008, operands=[True]),
        ]
        a = self._make_analysis(instructions=instrs)
        result, _ = a.analyze()
        # skeleton ignores operand leaves, typed includes them -> different hashes
        assert result["sha256_mlil_skeleton"] != result["sha256_mlil_typed"]


class TestMinHasherMLILKinds:
    def _make_func(self, instrs):
        # MinHasher iterates basic_blocks then over each block
        block = MagicMock()
        block.__iter__ = lambda self_: iter(instrs)
        f = MagicMock()
        f.basic_blocks = [block]
        return f

    def test_mlil_skeleton_uses_medium_normalizer(self):
        from redb.extractors.decompiler.bninja.similarity.minhasher import (
            MinHasher, TokenKind,
        )
        instrs = [
            MockMLILInstruction(operation=i, operands=[]) for i in range(5)
        ]
        func = self._make_func(instrs)
        hasher = MinHasher(seed=42, il_function=func, kind=TokenKind.MLIL)
        result = hasher.calculateMinHash()
        # 5 instructions -> 3 trigrams -> non-empty signature
        assert result != []

    def test_typed_mlil_differs_from_skeleton(self):
        from redb.extractors.decompiler.bninja.similarity.minhasher import (
            MinHasher, TokenKind,
        )
        instrs = [
            MockMLILInstruction(operation=1, operands=[42]),
            MockMLILInstruction(operation=2, operands=["s"]),
            MockMLILInstruction(operation=3, operands=[True]),
            MockMLILInstruction(operation=4, operands=[1.5]),
        ]
        func = self._make_func(instrs)
        skel = MinHasher(seed=42, il_function=func, kind=TokenKind.MLIL).calculateMinHash()
        typed = MinHasher(seed=42, il_function=func, kind=TokenKind.TYPED_MLIL).calculateMinHash()
        # Same seed, same instructions, but typed has extra leaf tokens
        # -> hashes should generally differ
        assert skel != typed

    def test_mlil_too_few_instructions(self):
        from redb.extractors.decompiler.bninja.similarity.minhasher import (
            MinHasher, TokenKind,
        )
        instrs = [MockMLILInstruction(operation=1, operands=[])] * 2
        func = self._make_func(instrs)
        hasher = MinHasher(seed=42, il_function=func, kind=TokenKind.MLIL)
        assert hasher.calculateMinHash() == []

    def test_unsupported_kind_raises(self):
        from redb.extractors.decompiler.bninja.similarity.minhasher import MinHasher
        func = self._make_func([])
        hasher = MinHasher(seed=42, il_function=func, kind="bogus")
        with pytest.raises(ValueError):
            hasher.calculateMinHash()