Watshara Shoombuatong

40 papers C 1Journal 39

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	A comprehensive review and evaluation of machine learning-based approaches for identifying tumor T cell antigens. Comput. Biol. Chem. Watshara Shoombuatong, Saeed Ahmed, S. M. Hasan Mahmud, Nalini Schaduangrat
2025	J	`jnl`	ACSMPred-FRL: Accelerating the Identification of Anticancer Small Molecules Using Feature Representation Learning. IEEE Access Watshara Shoombuatong, Nalini Schaduangrat, Lawankorn Mookdarsanit, S. M. Hasan Mahmud, Kanthida Kusonmano, Pakpoom Mookdarsanit
2025	J	`jnl`	AttBiomarker: unveiling preeclampsia biomarkers and molecular pathways through two-stage gene selection techniques and attention-based CNN with gene regulatory network analysis. Briefings Bioinform. Sakib Sarker, S. M. Hasan Mahmud, Md. Faruk Hosen, Michael Kah Ong Goh, Watshara Shoombuatong
2025	J	`jnl`	DeepHDAC3i: Leveraging an Interpretable Deep Learning-Based Framework for the Accelerated Discovery of HDAC3 Inhibitors. IEEE Trans. Comput. Biol. Bioinform. Saeed Ahmed, Nalini Schaduangrat, Ittipat Meewan, Watshara Shoombuatong
2025	J	`jnl`	Explainable AI-driven prediction of influenza neuraminidase inhibitors using a stacked ensemble-learning framework. Comput. Biol. Medicine Ittipat Meewan, Nalini Schaduangrat, Lawankorn Mookdarsanit, Pakpoom Mookdarsanit, Watshara Shoombuatong
2025	J	`jnl`	M3S-ALG: Improved and robust prediction of allergenicity of chemical compounds by using a novel multi-step stacking strategy. Future Gener. Comput. Syst. Phasit Charoenkwan, Nalini Schaduangrat, Le Thi Phan, Balachandran Manavalan, Watshara Shoombuatong
2025	J	`jnl`	M3S-GRPred: a novel ensemble learning approach for the interpretable prediction of glucocorticoid receptor antagonists using a multi-step stacking strategy. BMC Bioinform. Nalini Schaduangrat, Hathaichanok Chuntakaruk, Thanyada Rungrotmongkol, Pakpoom Mookdarsanit, Watshara Shoombuatong
2025	J	`jnl`	iMRSA-Fuse: A Fast and Accurate Computational Approach for Predicting Anti-MRSA Peptides by Fusing Multi-View Information. IEEE Trans. Comput. Biol. Bioinform. Phasit Charoenkwan, Nalini Schaduangrat, Mohammad Ali Moni, Watshara Shoombuatong
2024	J	`jnl`	The role of ncRNA regulatory mechanisms in diseases - case on gestational diabetes. Briefings Bioinform. Dong Gao, Liping Ren, Yu-Duo Hao, Nalini Schaduangrat, Xiao-Wei Liu, Shi-Shi Yuan, Yu-He Yang, Yan Wang, Watshara Shoombuatong, Hui Ding
2023	J	`jnl`	DeepAR: a novel deep learning-based hybrid framework for the interpretable prediction of androgen receptor antagonists. J. Cheminformatics Nalini Schaduangrat, Nuttapat Anuwongcharoen, Phasit Charoenkwan, Watshara Shoombuatong
2023	J	`jnl`	MMPatho: Leveraging Multilevel Consensus and Evolutionary Information for Enhanced Missense Mutation Pathogenic Prediction. J. Chem. Inf. Model. Fang Ge, Muhammad Arif, Zihao Yan, Hanin H. Alahmadi, Apilak Worachartcheewan, Dong-Jun Yu, Watshara Shoombuatong
2023	J	`jnl`	PSRQSP: An effective approach for the interpretable prediction of quorum sensing peptide using propensity score representation learning. Comput. Biol. Medicine Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Changmin Oh, Balachandran Manavalan, Watshara Shoombuatong
2023	J	`jnl`	PSRTTCA: A new approach for improving the prediction and characterization of tumor T cell antigens using propensity score representation learning. Comput. Biol. Medicine Phasit Charoenkwan, Chonlatip Pipattanaboon, Chanin Nantasenamat, Md. Mehedi Hasan, Mohammad Ali Moni, Pietro Lio', Watshara Shoombuatong
2023	J	`jnl`	StackTTCA: a stacking ensemble learning-based framework for accurate and high-throughput identification of tumor T cell antigens. BMC Bioinform. Phasit Charoenkwan, Nalini Schaduangrat, Watshara Shoombuatong
2023	J	`jnl`	TIPred: a novel stacked ensemble approach for the accelerated discovery of tyrosinase inhibitory peptides. BMC Bioinform. Phasit Charoenkwan, Sasikarn Kongsompong, Nalini Schaduangrat, Pramote Chumnanpuen, Watshara Shoombuatong
2022	J	`jnl`	DeepDNAbP: A deep learning-based hybrid approach to improve the identification of deoxyribonucleic acid-binding proteins. Comput. Biol. Medicine Md. Faruk Hosen, S. M. Hasan Mahmud, Kawsar Ahmed, Wenyu Chen, Mohammad Ali Moni, Hong-Wen Deng, Watshara Shoombuatong, Md. Mehedi Hasan
2022	J	`jnl`	Improved prediction and characterization of blood-brain barrier penetrating peptides using estimated propensity scores of dipeptides. J. Comput. Aided Mol. Des. Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Watshara Shoombuatong
2022	J	`jnl`	NEPTUNE: A novel computational approach for accurate and large-scale identification of tumor homing peptides. Comput. Biol. Medicine Phasit Charoenkwan, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Balachandran Manavalan, Watshara Shoombuatong
2022	J	`jnl`	SAPPHIRE: A stacking-based ensemble learning framework for accurate prediction of thermophilic proteins. Comput. Biol. Medicine Phasit Charoenkwan, Nalini Schaduangrat, Mohammad Ali Moni, Pietro Lio', Balachandran Manavalan, Watshara Shoombuatong
2021	J	`jnl`	BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides. Bioinform. Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
2021	J	`jnl`	Effects of Bacille Calmette Guerin (BCG) vaccination during COVID-19 infection. Comput. Biol. Medicine Utpala Nanda Chowdhury, Md. Omar Faruqe, Md Mehedy, Shamim Ahmad, M. Babul Islam, Watshara Shoombuatong, A. K. M. Azad, Mohammad Ali Moni
2021	J	`jnl`	IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations. J. Comput. Aided Mol. Des. Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hiroyuki Kurata
2021	J	`jnl`	NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning. Briefings Bioinform. Md. Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata
2021	J	`jnl`	StackHCV: a web-based integrative machine-learning framework for large-scale identification of hepatitis C virus NS5B inhibitors. J. Comput. Aided Mol. Des. Aijaz Ahmad Malik, Warot Chotpatiwetchkul, Chuleeporn Phanus-umporn, Chanin Nantasenamat, Phasit Charoenkwan, Watshara Shoombuatong
2021	J	`jnl`	StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides. Briefings Bioinform. Phasit Charoenkwan, Wararat Chiangjong, Chanin Nantasenamat, Md. Mehedi Hasan, Balachandran Manavalan, Watshara Shoombuatong
2020	J	`jnl`	HCVpred : A web server for predicting the bioactivity of hepatitis C virus NS5B inhibitors. J. Comput. Chem. Aijaz Ahmad Malik, Chuleeporn Phanus-umporn, Nalini Schaduangrat, Watshara Shoombuatong, Chartchalerm Isarankura-Na-Ayudhya, Chanin Nantasenamat
2020	J	`jnl`	HLPpred-Fuse: improved and robust prediction of hemolytic peptide and its activity by fusing multiple feature representation. Bioinform. Md. Mehedi Hasan, Nalini Schaduangrat, Shaherin Basith, Gwang Lee, Watshara Shoombuatong, Balachandran Manavalan
2020	J	`jnl`	Meta-iPVP: a sequence-based meta-predictor for improving the prediction of phage virion proteins using effective feature representation. J. Comput. Aided Mol. Des. Phasit Charoenkwan, Chanin Nantasenamat, Md. Mehedi Hasan, Watshara Shoombuatong
2020	J	`jnl`	ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations. J. Comput. Aided Mol. Des. Mst. Shamima Khatun, Md. Mehedi Hasan, Watshara Shoombuatong, Hiroyuki Kurata
2020	J	`jnl`	iUmami-SCM: A Novel Sequence-Based Predictor for Prediction and Analysis of Umami Peptides Using a Scoring Card Method with Propensity Scores of Dipeptides. J. Chem. Inf. Model. Phasit Charoenkwan, Janchai Yana, Chanin Nantasenamat, Md. Mehedi Hasan, Watshara Shoombuatong
2019	J	`jnl`	Correction to: ThalPred: a web-based prediction tool for discriminating thalassemia trait and ron deficiency anemia. BMC Medical Informatics Decis. Mak. Vishuda Laengsri, Watshara Shoombuatong, W. Adirojananon, Chanin Nantasenamat, Virapong Prachayasittikul, Pornlada Nuchnoi
2019	J	`jnl`	HIVCoR: A sequence-based tool for predicting HIV-1 CRF01_AE coreceptor usage. Comput. Biol. Chem. Sayamon Hongjaisee, Chanin Nantasenamat, Tanawan Samleerat Carraway, Watshara Shoombuatong
2019	J	`jnl`	THPep: A machine learning-based approach for predicting tumor homing peptides. Comput. Biol. Chem. Watshara Shoombuatong, Nalini Schaduangrat, Reny Pratiwi, Chanin Nantasenamat
2019	J	`jnl`	ThalPred: a web-based prediction tool for discriminating thalassemia trait and iron deficiency anemia. BMC Medical Informatics Decis. Mak. Vishuda Laengsri, Watshara Shoombuatong, W. Adirojananon, C. Nantasenamart, Virapong Prachayasittikul, Pornlada Nuchnoi
2017	J	`jnl`	AnkPlex: algorithmic structure for refinement of near-native ankyrin-protein docking. BMC Bioinform. Tanchanok Wisitponchai, Watshara Shoombuatong, Vannajan Sanghiran Lee, Kuntida Kitidee, Chatchai Tayapiwatana
2016	J	`jnl`	osFP: a web server for predicting the oligomeric states of fluorescent proteins. J. Cheminformatics Saw Simeon, Watshara Shoombuatong, Nuttapat Anuwongcharoen, Likit Preeyanon, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
2015	J	`jnl`	Sequence based human leukocyte antigen gene prediction using informative physicochemical properties. Int. J. Data Min. Bioinform. Watshara Shoombuatong, Panuwat Mekha, Jeerayut Chaijaruwanich
2013	C	`conf`	Predicting protein crystallization using a simple scoring card method. CIBCB Watshara Shoombuatong, Hui-Ling Huang, Jeerayut Chaijaruwanich, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho
2012	J	`jnl`	HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees. Comput. Biol. Medicine Watshara Shoombuatong, Sayamon Hongjaisee, Francis Barin, Jeerayut Chaijaruwanich, Tanawan Samleerat
2011	J	`jnl`	Prediction of the disulphide bonding state of cysteines in proteins using Conditional Random Fields. Int. J. Data Min. Bioinform. Watshara Shoombuatong, Patrinee Traisathit, Sukon Prasitwattanaseree, Chatchai Tayapiwatana, Robert W. Cutler, Jeerayut Chaijaruwanich