Wanwen Zeng

15 papers Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2024 — conf
Inferring Gene Regulatory Network Based on scATAC-seq Data with Gene Perturbation.
BIBM
Wei Shao, Yuti Liu, Shuang Zhang, Shuang Chen, Qiao Liu, Jianyu Zhou, Wanwen Zeng
2023 J jnl
Deep generative modeling and clustering of single cell Hi-C data.
Briefings Bioinform.
Qiao Liu, Wanwen Zeng, Wei Zhang, Sicheng Wang, Hongyang Chen, Rui Jiang, Mu Zhou, Shaoting Zhang
2023 J jnl
DeepDrug: A general graph-based deep learning framework for drug-drug interactions and drug-target interactions prediction.
Quant. Biol.
Qijin Yin, Rui Fan, Xusheng Cao, Qiao Liu, Rui Jiang, Wanwen Zeng
2023 J jnl
HiChIPdb: a comprehensive database of HiChIP regulatory interactions.
Nucleic Acids Res.
Wanwen Zeng, Qiao Liu, Qijin Yin, Rui Jiang, Wing Hung Wong
2022 J jnl
scGraph: a graph neural network-based approach to automatically identify cell types.
Bioinform.
Qijin Yin, Qiao Liu, Zhuoran Fu, Wanwen Zeng, Boheng Zhang, Xuegong Zhang, Rui Jiang, Hairong Lv
2021 J jnl
SilencerDB: a comprehensive database of silencers.
Nucleic Acids Res.
Wanwen Zeng, Shengquan Chen, Xuejian Cui, Xiaoyang Chen, Zijing Gao, Rui Jiang
2020 J jnl
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data.
Quant. Biol.
Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang
2020 J jnl
Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network.
Bioinform.
Wanwen Zeng, Yong Wang, Rui Jiang
2019 J jnl
EnDisease: a manually curated database for enhancer-disease associations.
Database J. Biol. Databases Curation
Wanwen Zeng, Xu Min, Rui Jiang
2018 J jnl
Prediction of enhancer-promoter interactions via natural language processing.
BMC Genom.
Wanwen Zeng, Mengmeng Wu, Rui Jiang
2017 J jnl
Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding.
Bioinform.
Xu Min, Wanwen Zeng, Ning Chen, Ting Chen, Rui Jiang
2017 — conf
Integrating embeddings of multiple gene networks to prioritize complex disease-associated genes.
BIBM
Mengmeng Wu, Wanwen Zeng, Wenqiang Liu, Yijia Zhang, Ting Chen, Rui Jiang
2017 J jnl
Mimvec: a deep learning approach for analyzing the human phenome.
BMC Syst. Biol.
Mingxin Gan, Wenran Li, Wanwen Zeng, Xiaojian Wang, Rui Jiang
2017 J jnl
Predicting enhancers with deep convolutional neural networks.
BMC Bioinform.
Xu Min, Wanwen Zeng, Shengquan Chen, Ning Chen, Ting Chen, Rui Jiang
2016 J jnl
dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions.
Database J. Biol. Databases Curation
Jiaxin Wu, Mengmeng Wu, Lianshuo Li, Zhuo Liu, Wanwen Zeng, Rui Jiang