W. Evan Johnson

11 papers Journal 9Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Interactive analysis of single-cell data using flexible workflows with SCTK2.
Patterns
Yichen Wang, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Akavoor, Xinyun Cao, Salam Alabdullatif, Syed Ali Zaib, Zhe Wang, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell
2021 J jnl
Robustifying genomic classifiers to batch effects via ensemble learning.
Bioinform.
Yuqing Zhang, Prasad Patil, W. Evan Johnson, Giovanni Parmigiani
2019 J jnl
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.
BMC Bioinform.
Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
2018 J jnl
Alternative empirical Bayes models for adjusting for batch effects in genomic studies.
BMC Bioinform.
Yuqing Zhang, David F. Jenkins, Solaiappan Manimaran, W. Evan Johnson
2016 J jnl
BatchQC: interactive software for evaluating sample and batch effects in genomic data.
Bioinform.
Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush, Benjamin Haibe-Kains, Héctor Corrada Bravo, W. Evan Johnson
2015 J jnl
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.
Bioinform.
Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson
2015 J jnl
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results.
Bioinform.
Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo
2012 — conf
Parallel Pair-HMM SNP Detection.
IPDPS Workshops
Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson
2012 J jnl
The sva package for removing batch effects and other unwanted variation in high-throughput experiments.
Bioinform.
Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey
2011 — conf
Parallel Mapping Approaches for GNUMAP.
IPDPS Workshops
Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson
2010 J jnl
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.
Bioinform.
Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson