Vytas K. Svedas

14 papers Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment.
Bioinform.
Maksim V. Shegay, Vytas K. Svedas, Vladimir V. Voevodin, Dmitry A. Suplatov, Nina N. Popova
2021 J jnl
Co-designing HPC-systems by computing capabilities and management flexibility to accommodate bioinformatic workflows at different complexity levels.
J. Supercomput.
Dmitry A. Suplatov, Maksim V. Shegay, Yana A. Sharapova, Ivan V. Timokhin, Nina Popova, Vladimir V. Voevodin, Vytas K. Svedas
2021 J jnl
PLUMED Plugin Integration into High Performance Pmemd Program for Enhanced Molecular Dynamics Simulations.
Supercomput. Front. Innov.
Viktor V. Drobot, Evgeny M. Kirilin, Kirill E. Kopylov, Vytas K. Svedas
2020 J jnl
EasyAmber: A comprehensive toolbox to automate the molecular dynamics simulation of proteins.
J. Bioinform. Comput. Biol.
Dmitry A. Suplatov, Yana A. Sharapova, Vytas K. Svedas
2020 J jnl
Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies.
Nucleic Acids Res.
Dmitry A. Suplatov, Yana A. Sharapova, Elizaveta Geraseva, Vytas K. Svedas
2020 J jnl
vsFilt: A Tool to Improve Virtual Screening by Structural Filtration of Docking Poses.
J. Chem. Inf. Model.
Irina V. Gushchina, Aleksandra M. Polenova, Dmitry A. Suplatov, Vytas K. Svedas, Dmitry K. Nilov
2019 — conf
High-Performance Hybrid Computing for Bioinformatic Analysis of Protein Superfamilies.
RuSCDays
Dmitry A. Suplatov, Yana A. Sharapova, Maksim V. Shegay, Nina N. Popova, Kateryna Fesko, Vladimir V. Voevodin, Vytas K. Svedas
2019 J jnl
Yosshi: a web-server for disulfide engineering by bioinformatic analysis of diverse protein families.
Nucleic Acids Res.
Dmitry A. Suplatov, Daria Timonina, Yana A. Sharapova, Vytas K. Svedas
2019 J jnl
parMATT: parallel multiple alignment of protein 3D-structures with translations and twists for distributed-memory systems.
Bioinform.
Maksim V. Shegay, Dmitry A. Suplatov, Nina N. Popova, Vytas K. Svedas, Vladimir V. Voevodin
2018 J jnl
Mustguseal: a server for multiple structure-guided sequence alignment of protein families.
Bioinform.
Dmitry A. Suplatov, Kirill E. Kopylov, Nina N. Popova, Vladimir V. Voevodin, Vytas K. Svedas
2018 J jnl
Simulating the Long-timescale Structural Behavior of Bacterial and Influenza Neuraminidases with Different HPC Resources.
Supercomput. Front. Innov.
Yana A. Sharapova, Dmitry A. Suplatov, Vytas K. Svedas
2018 J jnl
The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
J. Bioinform. Comput. Biol.
Dmitry A. Suplatov, Yana A. Sharapova, Daria Timonina, Kirill E. Kopylov, Vytas K. Svedas
2016 J jnl
Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer.
J. Bioinform. Comput. Biol.
Dmitry A. Suplatov, Nina Popova, Sergey A. Zhumatiy, Vladimir V. Voevodin, Vytas K. Svedas
2014 J jnl
pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families.
Nucleic Acids Res.
Dmitry A. Suplatov, Eugeny M. Kirilin, Mikhail Arbatsky, Vakil Takhaveev, Vytas K. Svedas