Vladimir Reinharz

18 papers B 3C 1Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2025 — conf
Tree Decomposition for Reconstructing Ancestral RNA Sequences of Multiple Families.
RECOMB-CG
Songdi Hu, Vladimir Reinharz, Olivier Tremblay-Savard
2024 J jnl
Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.
Bioinform.
Gabriel Loyer, Vladimir Reinharz
2024 — conf
Parallel Maximal Common Subgraphs with Labels for Molecular Biology.
PPAM (1)
Wilfried Agbeto, Camille Coti, Vladimir Reinharz
2023 C conf
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique.
WABI
Théo Boury, Yann Ponty, Vladimir Reinharz
2023 J jnl
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics.
PLoS Comput. Biol.
Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik, Susan L. Uprichard, Kazuaki Chayama, Harel Dahari
2021 B conf
A Graph-Based Similarity Approach to Classify Recurrent Complex Motifs from Their Context in RNA Structures.
SEA
Coline Gianfrotta, Vladimir Reinharz, Dominique Barth, Alain Denise
2021 J jnl
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.
PLoS Comput. Biol.
Antoine Soulé, Vladimir Reinharz, Roman Sarrazin-Gendron, Alain Denise, Jérôme Waldispühl
2020 B conf
Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification.
RECOMB
Roman Sarrazin-Gendron, Hua-Ting Yao, Vladimir Reinharz, Carlos G. Oliver, Yann Ponty, Jérôme Waldispühl
2020 J jnl
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs.
Bioinform.
Matan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, Yann Ponty, Jérôme Waldispühl, Danny Barash
2018 J jnl
Design of RNAs: comparing programs for inverse RNA folding.
Briefings Bioinform.
Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash
2017 J jnl
A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics.
Frontiers Appl. Math. Stat.
Vladimir Reinharz, Alexander Churkin, Harel Dahari, Danny Barash
2017 J jnl
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res.
Jason Yao, Vladimir Reinharz, François Major, Jérôme Waldispühl
2017 J jnl
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data.
Nucleic Acids Res.
Jason Yao, Vladimir Reinharz, François Major, Jérôme Waldispühl
2016 J jnl
incaRNAfbinv: a web server for the fragment-based design of RNA sequences.
Nucleic Acids Res.
Matan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl, Danny Barash
2013 B conf
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs.
RECOMB
Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl
2013 J jnl
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Bioinform.
Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl
2013 J jnl
Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs.
J. Comput. Biol.
Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl
2012 J jnl
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
Bioinform.
Vladimir Reinharz, François Major, Jérôme Waldispühl