Vladimir Poroikov

41 papers Journal 41

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	A computational approach for classification of HIV drug resistance based on the self-consistent extreme classifier. Comput. Methods Programs Biomed. Leonid A. Stolbov, Anastasia V. Rudik, E. A. Stolbova, A. V. Pokrovskaya, A. B. Shemshura, D. E. Kireev, A. A. Lagunin, Dmitrii Filimonov, Vladimir Poroikov, Olga A. Tarasova
2024	J	`jnl`	SAnDReS 2.0: Development of machine-learning models to explore the scoring function space. J. Comput. Chem. Walter Filgueira de Azevedo Jr., Rodrigo Quiroga, Marcos Ariel Villarreal, Nelson José Freitas da Silveira, Gabriela Bitencourt-Ferreira, Amauri Duarte da Silva, Martina Veit-Acosta, Patricia Rufino Oliveira, Marco Tutone, Nadezhda Yu. Biziukova, Vladimir Poroikov, Olga A. Tarasova, Stéphanie Baud
2023	J	`jnl`	HGMMX: Host Gut Microbiota Metabolism Xenobiotics Database. J. Chem. Inf. Model. Anton S. Kolodnitsky, Nikita Ionov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2023	J	`jnl`	Phyto4Health: Database of Phytocomponents from Russian Pharmacopoeia Plants. J. Chem. Inf. Model. Nikita Ionov, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2022	J	`jnl`	Chemical named entity recognition in the texts of scientific publications using the naïve Bayes classifier approach. J. Cheminformatics Olga A. Tarasova, Anastasia V. Rudik, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov
2022	J	`jnl`	HIV-1 drug resistance profiling using amino acid sequence space cartography. Bioinform. Karina Pikalyova, Alexey Orlov, Arkadii I. Lin, Olga A. Tarasova, Gilles Marcou, Dragos Horvath, Vladimir Poroikov, Alexandre Varnek
2022	J	`jnl`	The method predicting interaction between protein targets and small-molecular ligands with the wide applicability domain. Comput. Biol. Chem. Dmitry A. Karasev, Boris Sobolev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2021	J	`jnl`	Extraction of Data on Parent Compounds and Their Metabolites from Texts of Scientific Abstracts. J. Chem. Inf. Model. Olga A. Tarasova, Nadezhda Yu. Biziukova, Anastassia V. Rudik, Alexander V. Dmitriev, Dmitry Filimonov, Vladimir Poroikov
2021	J	`jnl`	Molecular descriptor analysis of approved drugs using unsupervised learning for drug repurposing. Comput. Biol. Medicine Sita Sirisha Madugula, Lijo John, Selvaraman Nagamani, Anamika Singh Gaur, Vladimir Poroikov, G. Narahari Sastry
2021	J	`jnl`	The SistematX Web Portal of Natural Products: An Update. J. Chem. Inf. Model. Renan P. O. Costa, Lucas Fernandes Lucena, Lorena Mara A. Silva, Guilherme Julião Zocolo, Chonny Herrera-Acevedo, Luciana Scotti, Fernando Batista Da-Costa, Nikita Ionov, Vladimir Poroikov, Eugene N. Muratov, Marcus Tulius Scotti
2020	J	`jnl`	AntiHIV-Pred: web-resource for in silico prediction of anti-HIV/AIDS activity. Bioinform. Leonid A. Stolbov, Dmitry S. Druzhilovskiy, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus
2020	J	`jnl`	Computational Approaches To Identify A Hidden Pharmacological Potential In Large Chemical Libraries. Supercomput. Front. Innov. Dmitry S. Druzhilovskiy, Leonid A. Stolbov, Polina I. Savosina, Pavel V. Pogodin, Dmitry Filimonov, Alexander V. Veselovsky, Karen Stefanisko, Nadya I. Tarasova, Marc C. Nicklaus, Vladimir Poroikov
2019	J	`jnl`	AntiBac-Pred: A Web Application for Predicting Antibacterial Activity of Chemical Compounds. J. Chem. Inf. Model. Pavel V. Pogodin, Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2019	J	`jnl`	Assessment of the cardiovascular adverse effects of drug-drug interactions through a combined analysis of spontaneous reports and predicted drug-target interactions. PLoS Comput. Biol. Sergey Ivanov, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2019	J	`jnl`	Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications. J. Chem. Inf. Model. Olga A. Tarasova, Nadezhda Yu. Biziukova, Dmitry Filimonov, Vladimir Poroikov, Marc C. Nicklaus
2019	J	`jnl`	Metatox - Web application for generation of metabolic pathways and toxicity estimation. J. Bioinform. Comput. Biol. Anastasiya V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2018	J	`jnl`	ADVERPred-Web Service for Prediction of Adverse Effects of Drugs. J. Chem. Inf. Model. Sergey Ivanov, Alexey Lagunin, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2018	J	`jnl`	Identification of potential drug targets for treatment of refractory epilepsy using network pharmacology. J. Bioinform. Comput. Biol. Vladislav M. Bezhentsev, Sergey Ivanov, Sandeep Kumar, Rajesh Kumar Goel, Vladimir Poroikov
2018	J	`jnl`	Molecular property diagnostic suite for diabetes mellitus (MPDS J. Biomed. Informatics Anamika Singh Gaur, Selvaraman Nagamani, Karunakar Tanneeru, Dmitry S. Druzhilovskiy, Anastassia V. Rudik, Vladimir Poroikov, G. Narahari Sastry
2018	J	`jnl`	ROSC-Pred: web-service for rodent organ-specific carcinogenicity prediction. Bioinform. Alexey Lagunin, Anastasia V. Rudik, Dmitry S. Druzhilovskiy, Dmitry Filimonov, Vladimir Poroikov
2017	J	`jnl`	MetaTox: Web Application for Predicting Structure and Toxicity of Xenobiotics' Metabolites. J. Chem. Inf. Model. Anastasia V. Rudik, Vladislav M. Bezhentsev, Alexander V. Dmitriev, Dmitry S. Druzhilovskiy, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2017	J	`jnl`	PASS-based approach to predict HIV-1 reverse transcriptase resistance. J. Bioinform. Comput. Biol. Olga A. Tarasova, Dmitry Filimonov, Vladimir Poroikov
2016	J	`jnl`	Prediction of reacting atoms for the major biotransformation reactions of organic xenobiotics. J. Cheminformatics Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2015	J	`jnl`	QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors. J. Chem. Inf. Model. Olga A. Tarasova, Aleksandra F. Urusova, Dmitry Filimonov, Marc C. Nicklaus, Alexey V. Zakharov, Vladimir Poroikov
2015	J	`jnl`	SOMP: web server for Bioinform. Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2014	J	`jnl`	Metabolism Site Prediction Based on Xenobiotic Structural Formulas and PASS Prediction Algorithm. J. Chem. Inf. Model. Anastasia V. Rudik, Alexander V. Dmitriev, Alexey Lagunin, Dmitry Filimonov, Vladimir Poroikov
2014	J	`jnl`	Revealing pharmacodynamics of medicinal plants using in silico approach: A case study with wet lab validation. Comput. Biol. Medicine Damanpreet Singh, Dinesh Y. Gawande, Tanveer Singh, Vladimir Poroikov, Rajesh Kumar Goel
2013	J	`jnl`	DIGEP-Pred: web service for Bioinform. Alexey Lagunin, Sergey Ivanov, Anastasia V. Rudik, Dmitry Filimonov, Vladimir Poroikov
2012	J	`jnl`	OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia. J. Biomed. Semant. Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry J. Hardy
2010	J	`jnl`	Collaborative development of predictive toxicology applications. J. Cheminformatics Barry J. Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Kramer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, David Gallagher, Vladimir Poroikov, Dmitry Filimonov, Alexey V. Zakharov, Alexey Lagunin, Tatyana Gloriozova, Sergey Novikov, Natalia Skvortsova, Dmitry S. Druzhilovskiy, Sunil Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher
2010	J	`jnl`	Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates. BMC Bioinform. Boris Sobolev, Dmitry Filimonov, Alexey Lagunin, Alexey V. Zakharov, Olga Koborova, Alexander E. Kel, Vladimir Poroikov
2008	J	`jnl`	Recognition of protein Function Using the Local Similarity. J. Bioinform. Comput. Biol. Kirill Alexandrov, Boris Sobolev, Dmitry Filimonov, Vladimir Poroikov
2007	J	`jnl`	CYCLONET - an integrated database on cell cycle regulation and carcinogenesis. Nucleic Acids Res. Fedor A. Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel
2005	J	`jnl`	Why relevant chemical information cannot be exchanged without disclosing structures. J. Comput. Aided Mol. Des. Dmitry Filimonov, Vladimir Poroikov
2004	J	`jnl`	A New Statistical Approach to Predicting Aromatic Hydroxylation Sites. Comparison with Model-Based Approaches. J. Chem. Inf. Model. Yulia V. Borodina, Anastasia V. Rudik, Dmitrii Filimonov, N. Kharchevnikova, Alexander V. Dmitriev, V. Blinova, Vladimir Poroikov
2003	J	`jnl`	PASS Biological Activity Spectrum Predictions in the Enhanced Open NCI Database Browser. J. Chem. Inf. Comput. Sci. Vladimir Poroikov, Dmitrii Filimonov, Wolf-Dietrich Ihlenfeldt, Tatyana Gloriozova, Alexey Lagunin, Yulia V. Borodina, Alla Stepanchikova, Marc C. Nicklaus
2003	J	`jnl`	Predicting Biotransformation Potential from Molecular Structure. J. Chem. Inf. Comput. Sci. Yulia V. Borodina, A. Sadym, Dmitrii Filimonov, V. Blinova, Alexander V. Dmitriev, Vladimir Poroikov
2002	J	`jnl`	How to acquire new biological activities in old compounds by computer prediction. J. Comput. Aided Mol. Des. Vladimir Poroikov, Dmitrii Filimonov
2000	J	`jnl`	PASS: prediction of activity spectra for biologically active substances. Bioinform. Alexey Lagunin, Alla Stepanchikova, Dmitrii Filimonov, Vladimir Poroikov
2000	J	`jnl`	Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds. J. Chem. Inf. Comput. Sci. Vladimir Poroikov, Dmitrii Filimonov, Yulia V. Borodina, A. A. Lagunin, A. Kos
1999	J	`jnl`	Chemical Similarity Assessment through Multilevel Neighborhoods of Atoms: Definition and Comparison with the Other Descriptors. J. Chem. Inf. Comput. Sci. Dmitrii Filimonov, Vladimir Poroikov, Yulia V. Borodina, Tatyana Gloriozova