Vladimir N. Uversky

42 papers C 3Misc 4Journal 33Unranked 2

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	B7 family of proteins in the norm and pathology: An intrinsic disorder angle. Comput. Biol. Chem. Premalata Pati, Vladimir N. Uversky
2025	J	`jnl`	Effects of pathological mutations on the CHCHD2 monomer structure: A study by AlphaFold3 linked to the generation of conformational ensembles. Comput. Biol. Medicine Zeyneb Azra Özmen, Fatma Nilsu Çayli, Vladimir N. Uversky, Junga Alexa Woo, David E. Kang, Orkid Coskuner-Weber
2025	J	`jnl`	Intelligence of Matter: Rise of a New Style of Doing Science and Scientific Thinking? Syst. Timir Tripathi, Vladimir N. Uversky, Alessandro Giuliani
2025	J	`jnl`	Intrinsic disorder angle of the HCV co-infection and super-infection with other hepatitis viruses. Comput. Biol. Medicine Elrashdy M. Redwan, Abdullah A. Aljadawi, Vladimir N. Uversky
2025	J	`jnl`	Intrinsic disorder in protein interaction networks linking cancer with metabolic diseases. Comput. Biol. Chem. Veda Naga Priya Vangala, Vladimir N. Uversky
2025	J	`jnl`	Unravelling intrinsically disordered and compositionally biased proteins in the cereal proteomes. Biosyst. Mouna Choura, Vladimir N. Uversky
2024	J	`jnl`	Key genes and pathways in the molecular landscape of pancreatic ductal adenocarcinoma: A bioinformatics and machine learning study. Comput. Biol. Chem. Sinan Eyuboglu, Semih Alpsoy, Vladimir N. Uversky, Orkid Coskuner-Weber
2024	J	`jnl`	SARS-CoV-2 NSP14 governs mutational instability and assists in making new SARS-CoV-2 variants. Comput. Biol. Medicine Sk. Sarif Hassan, Tanishta Bhattacharya, Debaleena Nawn, Ishana Jha, Pallab Basu, Elrashdy M. Redwan, Kenneth Lundstrom, Debmalya Barh, Bruno Silva Andrade, Murtaza M. Tambuwala, Alaa A. A. Aljabali, Altijana Hromic-Jahjefendic, Wagner Baetas-da-Cruz, Ángel Serrano-Aroca, Vladimir N. Uversky
2023	J	`jnl`	Predicting TF Proteins by Incorporating Evolution Information Through PSSM. IEEE ACM Trans. Comput. Biol. Bioinform. Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li
2023	—	`conf`	TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences. BIBM Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky
2022	J	`jnl`	DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. Min Fang, Yufeng He, Zhihua Du, Vladimir N. Uversky
2022	J	`jnl`	Inference of gene regulatory networks based on the Light Gradient Boosting Machine. Comput. Biol. Chem. Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky
2022	J	`jnl`	Insights into the structural peculiarities of the Comput. Biol. Medicine Fatemeh Bayani, Negin Safaei Hashkavaei, Vladimir N. Uversky, Sina Mozaffari-Jovin, Yahya Sefidbakht
2021	J	`jnl`	A unique view of SARS-CoV-2 through the lens of ORF8 protein. Comput. Biol. Medicine Sarif Sk. Hassan, Alaa A. A. Aljabali, Pritam Kumar Panda, Shinjini Ghosh, Diksha Attrish, Pabitra Pal Choudhury, Murat Seyran, Damiano Pizzol, Parise Adadi, Tarek Mohamed Abd El-Aziz, Antonio Soares, Ramesh Kandimalla, Kenneth Lundstrom, Amos Lal, Gajendra Kumar Azad, Vladimir N. Uversky, Samendra Sherchan, Wagner Baetas-da-Cruz, Bruce D. Uhal, Nima Rezaei, Gaurav Chauhan, Debmalya Barh, Elrashdy M. Redwan, Guy W. Dayhoff II, Nicolas G. Bazan, Ángel Serrano-Aroca, Amr El-Demerdash, Yogendra Kumar Mishra, Giorgio Palù, Kazuo Takayama, Adam M. Brufsky, Murtaza M. Tambuwala
2021	Misc	`conf`	Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky
2021	J	`jnl`	Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions. Briefings Bioinform. Naveen Kumar, Rahul Kaushik, Chandana Tennakoon, Vladimir N. Uversky, Sonia Longhi, Kam Y. J. Zhang, Sandeep Bhatia
2021	J	`jnl`	Understanding structural malleability of the SARS-CoV-2 proteins and relation to the comorbidities. Briefings Bioinform. Sagnik Sen, Ashmita Dey, Sanghamitra Bandhyopadhyay, Vladimir N. Uversky, Ujjwal Maulik
2020	J	`jnl`	DeepAdd: Protein function prediction from k-mer embedding and additional features. Comput. Biol. Chem. Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky
2020	Misc	`conf`	Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
2019	J	`jnl`	Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-β42. J. Chem. Inf. Model. Orkid Coskuner-Weber, Vladimir N. Uversky
2017	J	`jnl`	DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
2017	J	`jnl`	Tyrosine Regulates β-Sheet Structure Formation in Amyloid-β J. Chem. Inf. Model. Orkid Coskuner, Vladimir N. Uversky
2015	J	`jnl`	Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
2014	J	`jnl`	Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
2014	J	`jnl`	pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa
2013	J	`jnl`	D Nucleic Acids Res. Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough
2012	J	`jnl`	Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder. PLoS Comput. Biol. Vladimir Vacic, Phineus R. L. Markwick, Christopher J. Oldfield, Xiaoyue Zhao, Chad Haynes, Vladimir N. Uversky, Lilia M. Iakoucheva
2012	Misc	`conf`	Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
2012	J	`jnl`	MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
2012	Misc	`conf`	Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
2011	J	`jnl`	In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
2010	J	`jnl`	Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky
2009	J	`jnl`	Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins. PLoS Comput. Biol. Amrita Mohan, Vladimir N. Uversky, Predrag Radivojac
2008	J	`jnl`	Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter
2007	J	`jnl`	Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi
2007	J	`jnl`	DisProt: the Database of Disordered Proteins. Nucleic Acids Res. Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
2007	—	`conf`	Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker
2007	C	`conf`	Intrinsically Disordered Proteins in Human Diseases. BIBE Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker
2007	C	`conf`	Intrinsically Disordered Proteins: An Update. BIBE A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
2007	C	`conf`	Intrinsically Disordered Proteins: Predictions and Applications. BIBE A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
2006	J	`jnl`	Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes. PLoS Comput. Biol. Chad Haynes, Christopher J. Oldfield, Fei Ji, Niels Klitgord, Michael E. Cusick, Predrag Radivojac, Vladimir N. Uversky, Marc Vidal, Lilia M. Iakoucheva
2005	J	`jnl`	Structure-Related Statistical Singularities along Protein Sequences: A Correlation Study. J. Chem. Inf. Model. Mauro Colafranceschi, Alfredo Colosimo, Joseph P. Zbilut, Vladimir N. Uversky, Alessandro Giuliani