Vladimir Makarenkov

80 papers A 1C 2Journal 62Unranked 10

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Improving clustering quality evaluation in noisy Gaussian mixtures. Neurocomputing Renato Cordeiro de Amorim, Vladimir Makarenkov
2026	J	`jnl`	On the Objective and Feature Weights of Minkowski Weighted k-Means. CoRR Renato Cordeiro de Amorim, Vladimir Makarenkov
2025	J	`jnl`	BayTTA: Uncertainty-aware medical image classification with optimized test-time augmentation using Bayesian model averaging. Knowl. Based Syst. Zeinab Sherkatghanad, Moloud Abdar, Mohammadreza Bakhtyari, Pawel Plawiak, Vladimir Makarenkov
2025	J	`jnl`	ClustRecNet: A Novel End-to-End Deep Learning Framework for Clustering Algorithm Recommendation. CoRR Mohammadreza Bakhtyari, Bogdan Mazoure, Renato Cordeiro de Amorim, Guillaume Rabusseau, Vladimir Makarenkov
2025	J	`jnl`	Improving clustering quality evaluation in noisy Gaussian mixtures. CoRR Renato Cordeiro de Amorim, Vladimir Makarenkov
2025	J	`jnl`	Similarity-based transfer learning with deep learning networks for accurate CRISPR-Cas9 off-target prediction. PLoS Comput. Biol. Jérémy Charlier, Zeinab Sherkatghanad, Vladimir Makarenkov
2024	J	`jnl`	BayTTA: Uncertainty-aware medical image classification with optimized test-time augmentation using Bayesian model averaging. CoRR Zeinab Sherkatghanad, Moloud Abdar, Mohammadreza Bakhtyari, Vladimir Makarenkov
2024	J	`jnl`	Inertia-Based Indices to Determine the Number of Clusters in K-Means: An Experimental Evaluation. IEEE Access Andrei Rykov, Renato Cordeiro de Amorim, Vladimir Makarenkov, Boris G. Mirkin
2023	J	`jnl`	Binarized multi-gate mixture of Bayesian experts for cardiac syndrome X diagnosis: A clinician-in-the-loop scenario with a belief-uncertainty fusion paradigm. Inf. Fusion Moloud Abdar, Arash Mehrzadi, Milad Goudarzi, Farzad Masoudkabir, Leonardo Rundo, Mohammad Mamouei, Evis Sala, Abbas Khosravi, Vladimir Makarenkov, U. Rajendra Acharya, Seyedmohammad Saadatagah, Mohammadreza Naderian, Salvador García, Nizal Sarrafzadegan, Saeid Nahavandi
2023	A	`conf`	Cache-Efficient Dynamic Programming MDP Solver. ECAI Jaël Champagne Gareau, Guillaume Gosset, Éric Beaudry, Vladimir Makarenkov
2023	J	`jnl`	Inferring multiple consensus trees and supertrees using clustering: a review. CoRR Vladimir Makarenkov, Gayane S. Barseghyan, Nadia Tahiri
2023	J	`jnl`	On Neurocomputing Renato Cordeiro de Amorim, Vladimir Makarenkov
2023	J	`jnl`	UncertaintyFuseNet: Robust uncertainty-aware hierarchical feature fusion model with Ensemble Monte Carlo Dropout for COVID-19 detection. Inf. Fusion Moloud Abdar, Soorena Salari, Sina Qahremani, Hak-Keung Lam, Fakhri Karray, Sadiq Hussain, Abbas Khosravi, U. Rajendra Acharya, Vladimir Makarenkov, Saeid Nahavandi
2023	J	`jnl`	Using traditional machine learning and deep learning methods for on- and off-target prediction in CRISPR/Cas9: a review. Briefings Bioinform. Zeinab Sherkatghanad, Moloud Abdar, Jérémy Charlier, Vladimir Makarenkov
2022	J	`jnl`	Building alternative consensus trees and supertrees using Bioinform. Nadia Tahiri, Bernard Fichet, Vladimir Makarenkov
2022	—	`conf`	Cache-Efficient Memory Representation of Markov Decision Processes. Canadian AI Jaël Champagne Gareau, Éric Beaudry, Vladimir Makarenkov
2022	J	`jnl`	Fast and optimal branch-and-bound planner for the grid-based coverage path planning problem based on an admissible heuristic function. Frontiers Robotics AI Jaël Champagne Gareau, Éric Beaudry, Vladimir Makarenkov
2022	J	`jnl`	Low-Rank Representation of Reinforcement Learning Policies. J. Artif. Intell. Res. Bogdan Mazoure, Thang Doan, Tianyu Li, Vladimir Makarenkov, Joelle Pineau, Doina Precup, Guillaume Rabusseau
2022	J	`jnl`	SimPlot++: a Python application for representing sequence similarity and detecting recombination. Bioinform. Stéphane Samson, Etienne Lord, Vladimir Makarenkov
2021	J	`jnl`	A review of uncertainty quantification in deep learning: Techniques, applications and challenges. Inf. Fusion Moloud Abdar, Farhad Pourpanah, Sadiq Hussain, Dana Rezazadegan, Li Liu, Mohammad Ghavamzadeh, Paul W. Fieguth, Xiaochun Cao, Abbas Khosravi, U. Rajendra Acharya, Vladimir Makarenkov, Saeid Nahavandi
2021	J	`jnl`	Accurate deep learning off-target prediction with novel sgRNA-DNA sequence encoding in CRISPR-Cas9 gene editing. Bioinform. Jérémy Charlier, Robert Nadon, Vladimir Makarenkov
2021	J	`jnl`	Automated detection of shockable ECG signals: A review. Inf. Sci. Mohamed Hammad, Kandala N. V. P. S. Rajesh, Amira Abdelatey, Moloud Abdar, Mariam Zomorodi Moghadam, Ru-San Tan, U. Rajendra Acharya, Joanna Plawiak, Ryszard Tadeusiewicz, Vladimir Makarenkov, Nizal Sarrafzadegan, Abbas Khosravi, Saeid Nahavandi, Ahmed A. Abd El-Latif, Pawel Plawiak
2021	C	`conf`	Fast and Optimal Planner for the Discrete Grid-Based Coverage Path-Planning Problem. IDEAL Jaël Champagne Gareau, Éric Beaudry, Vladimir Makarenkov
2021	J	`jnl`	Improving cluster recovery with feature rescaling factors. Appl. Intell. Renato Cordeiro de Amorim, Vladimir Makarenkov
2021	J	`jnl`	Object Weighting: A New Clustering Approach to Deal with Outliers and Cluster Overlap in Computational Biology. IEEE ACM Trans. Comput. Biol. Bioinform. Alexandre Gondeau, Zahia Aouabed, Mohamed Hijri, Pedro R. Peres-Neto, Vladimir Makarenkov
2021	J	`jnl`	SimPlot++: a Python application for representing sequence similarity and detecting recombination. CoRR Stéphane Samson, Etienne Lord, Vladimir Makarenkov
2021	J	`jnl`	Uncertainty quantification in skin cancer classification using three-way decision-based Bayesian deep learning. Comput. Biol. Medicine Moloud Abdar, Maryam Samami, Sajjad Dehghani Mahmoodabad, Thang Doan, Bogdan Mazoure, Reza Hashemifesharaki, Li Liu, Abbas Khosravi, U. Rajendra Acharya, Vladimir Makarenkov, Saeid Nahavandi
2020	J	`jnl`	A Review of Uncertainty Quantification in Deep Learning: Techniques, Applications and Challenges. CoRR Moloud Abdar, Farhad Pourpanah, Sadiq Hussain, Dana Rezazadegan, Li Liu, Mohammad Ghavamzadeh, Paul W. Fieguth, Xiaochun Cao, Abbas Khosravi, U. Rajendra Acharya, Vladimir Makarenkov, Saeid Nahavandi
2020	J	`jnl`	Core Clustering as a Tool for Tackling Noise in Cluster Labels. J. Classif. Renato Cordeiro de Amorim, Vladimir Makarenkov, Boris G. Mirkin
2020	J	`jnl`	DGHNL: A new deep genetic hierarchical network of learners for prediction of credit scoring. Inf. Sci. Pawel Plawiak, Moloud Abdar, Joanna Plawiak, Vladimir Makarenkov, U. Rajendra Acharya
2020	J	`jnl`	Improving cluster recovery with feature rescaling factors. CoRR Renato Cordeiro de Amorim, Vladimir Makarenkov
2020	J	`jnl`	Provably efficient reconstruction of policy networks. CoRR Bogdan Mazoure, Thang Doan, Tianyu Li, Vladimir Makarenkov, Joelle Pineau, Doina Precup, Guillaume Rabusseau
2020	J	`jnl`	Transfer index, NetUniFrac and some useful shortest path-based distances for community analysis in sequence similarity networks. Bioinform. Henry Xing, Steven W. Kembel, Vladimir Makarenkov
2020	—	`conf`	VecHGrad for Solving Accurately Tensor Decomposition. Canadian AI Jérémy Charlier, Vladimir Makarenkov
2020	J	`jnl`	XtracTree for Regulator Validation of Bagging Methods Used in Retail Banking. CoRR Jérémy Charlier, Vladimir Makarenkov
2019	J	`jnl`	A Hybrid Latent Space Data Fusion Method for Multimodal Emotion Recognition. IEEE Access Shahla Nemati, Reza Rohani, Mohammad Ehsan Basiri, Moloud Abdar, Neil Y. Yen, Vladimir Makarenkov
2019	J	`jnl`	A new machine learning technique for an accurate diagnosis of coronary artery disease. Comput. Methods Programs Biomed. Moloud Abdar, Wojciech Ksiazek, U. Rajendra Acharya, Ru-San Tan, Vladimir Makarenkov, Pawel Plawiak
2019	—	`conf`	An Efficient Electric Vehicle Path-Planner That Considers the Waiting Time. SIGSPATIAL/GIS Jaël Champagne Gareau, Éric Beaudry, Vladimir Makarenkov
2019	—	`conf`	An intelligent shopping list based on the application of partitioning and machine learning algorithms. SciPy Nadia Tahiri, Bogdan Mazoure, Vladimir Makarenkov
2019	J	`jnl`	IAPSO-AIRS: A novel improved machine learning-based system for wart disease treatment. J. Medical Syst. Moloud Abdar, Vivi Nur Wijayaningrum, Sadiq Hussain, Roohallah Alizadehsani, Pawel Plawiak, U. Rajendra Acharya, Vladimir Makarenkov
2019	J	`jnl`	NE-nu-SVC: A New Nested Ensemble Clinical Decision Support System for Effective Diagnosis of Coronary Artery Disease. IEEE Access Moloud Abdar, U. Rajendra Acharya, Nizal Sarrafzadegan, Vladimir Makarenkov
2017	J	`jnl`	Detecting and removing multiplicative spatial bias in high-throughput screening technologies. Bioinform. Iurie Caraus, Bogdan Mazoure, Robert Nadon, Vladimir Makarenkov
2017	J	`jnl`	The Minkowski central partition as a pointer to a suitable distance exponent and consensus partitioning. Pattern Recognit. Renato Cordeiro de Amorim, Andrei Shestakov, Boris G. Mirkin, Vladimir Makarenkov
2017	J	`jnl`	Using the stability of objects to determine the number of clusters in datasets. Inf. Sci. Etienne Lord, Matthieu Willems, François-Joseph Lapointe, Vladimir Makarenkov
2016	J	`jnl`	A-Ward CoRR Renato Cordeiro de Amorim, Vladimir Makarenkov, Boris G. Mirkin
2016	J	`jnl`	A-Ward Inf. Sci. Renato Cordeiro de Amorim, Vladimir Makarenkov, Boris G. Mirkin
2016	J	`jnl`	Applying subclustering and L Neurocomputing Renato Cordeiro de Amorim, Vladimir Makarenkov
2015	J	`jnl`	Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms. BMC Bioinform. Etienne Lord, Abdoulaye Baniré Diallo, Vladimir Makarenkov
2015	J	`jnl`	Detecting and overcoming systematic bias in high-throughput screening technologies: a comprehensive review of practical issues and methodological solutions. Briefings Bioinform. Iurie Caraus, Abdulaziz A. Alsuwailem, Robert Nadon, Vladimir Makarenkov
2014	J	`jnl`	A fast compound algorithm for mining generators, closed itemsets, and computing links between equivalence classes. Ann. Math. Artif. Intell. Laszlo Szathmary, Petko Valtchev, Amedeo Napoli, Robert Godin, Alix Boc, Vladimir Makarenkov
2014	J	`jnl`	A new efficient algorithm for inferring explicit hybridization networks following the Neighbor-Joining principle. J. Bioinform. Comput. Biol. Matthieu Willems, Nadia Tahiri, Vladimir Makarenkov
2013	—	`ch.`	A New Effective Method for Elimination of Systematic Error in Experimental High-Throughput Screening. Algorithms from and for Nature and Life Vladimir Makarenkov, Plamen Dragiev, Robert Nadon
2013	—	`ch.`	An Efficient Algorithm for the Detection and Classification of Horizontal Gene Transfer Events and Identification of Mosaic Genes. Algorithms from and for Nature and Life Alix Boc, Pierre Legendre, Vladimir Makarenkov
2013	—	`conf`	Effect of Hundreds Sequenced Genomes on the Classification of Human Papillomaviruses. ECDA Bruno Daigle, Vladimir Makarenkov, Abdoulaye Baniré Diallo
2012	J	`jnl`	T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Res. Alix Boc, Alpha Boubacar Diallo, Vladimir Makarenkov
2012	J	`jnl`	Two effective methods for correcting experimental high-throughput screening data. Bioinform. Plamen Dragiev, Robert Nadon, Vladimir Makarenkov
2011	J	`jnl`	Detecting genomic regions associated with a disease using variability functions and Adjusted Rand Index. BMC Bioinform. Dunarel Badescu, Alix Boc, Abdoulaye Baniré Diallo, Vladimir Makarenkov
2011	—	`conf`	Fast Mining of Iceberg Lattices: A Modular Approach Using Generators. CLA Laszlo Szathmary, Petko Valtchev, Amedeo Napoli, Robert Godin, Alix Boc, Vladimir Makarenkov
2011	J	`jnl`	Systematic error detection in experimental high-throughput screening. BMC Bioinform. Plamen Dragiev, Robert Nadon, Vladimir Makarenkov
2010	J	`jnl`	Ancestors 1.0: a web server for ancestral sequence reconstruction. Bioinform. Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
2010	—	`conf`	Using Unsupervised Machine Learning Methods in High-Throughput Screening. DMIN Chérif Mballo, Vladimir Makarenkov
2009	J	`jnl`	A Whole Genome Study and Identification of Specific Carcinogenic Regions of the Human Papilloma Viruses. J. Comput. Biol. Abdoulaye Baniré Diallo, Dunarel Badescu, Mathieu Blanchette, Vladimir Makarenkov
2008	—	`conf`	An Evolutionary Study of the Human Papillomavirus Genomes. RECOMB-CG Dunarel Badescu, Abdoulaye Baniré Diallo, Mathieu Blanchette, Vladimir Makarenkov
2007	J	`jnl`	An efficient method for the detection and elimination of systematic error in high-throughput screening. Bioinform. Vladimir Makarenkov, Pablo Zentilli, Dmytro Kevorkov, Andrei V. Gagarin, Nathalie Malo, Robert Nadon
2007	J	`jnl`	Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem. J. Comput. Biol. Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
2006	—	`ch.`	A New Efficient Method for Assessing Missing Nucleotides in DNA Sequences in the Framework of a Generic Evolutionary Model. Data Science and Classification Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette, François-Joseph Lapointe
2006	—	`ch.`	Comparison of Two Methods for Detecting and Correcting Systematic Error in High-throughput Screening Data. Data Science and Classification Andrei Gagarin, Dmytro Kevorkov, Vladimir Makarenkov, Pablo Zentilli
2006	—	`conf`	Finding Maximum Likelihood Indel Scenarios. Comparative Genomics Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
2006	J	`jnl`	HTS-Corrector: software for the statistical analysis and correction of experimental high-throughput screening data. Bioinform. Vladimir Makarenkov, Dmytro Kevorkov, Pablo Zentilli, Andrei V. Gagarin, Nathalie Malo, Robert Nadon
2006	—	`ch.`	New Efficient Algorithm for Modeling Partial and Complete Gene Transfer Scenarios. Data Science and Classification Vladimir Makarenkov, Alix Boc, Charles F. Delwiche, Alpha Boubacar Diallo, Hervé Philippe
2004	J	`jnl`	A weighted least-squares approach for inferring phylogenies from incomplete distance matrices. Bioinform. Vladimir Makarenkov, François-Joseph Lapointe
2004	J	`jnl`	From a Phylogenetic Tree to a Reticulated Network. J. Comput. Biol. Vladimir Makarenkov, Pierre Legendre
2004	J	`jnl`	On the extension of a partial metric to a tree metric. Discret. Math. Alain Guénoche, Bruno Leclerc, Vladimir Makarenkov
2003	C	`conf`	New Efficient Algorithm for Detection of Horizontal Gene Transfer Events. WABI Alix Boc, Vladimir Makarenkov
2001	J	`jnl`	Optimal Variable Weighting for Ultrametric and Additive Trees and J. Classif. Vladimir Makarenkov, Pierre Legendre
2001	J	`jnl`	T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks. Bioinform. Vladimir Makarenkov
2000	J	`jnl`	Comparison of Additive Trees Using Circular Orders. J. Comput. Biol. Vladimir Makarenkov, Bruno Leclerc
2000	J	`jnl`	Generalized trees related with tree metrics. Electron. Notes Discret. Math. Alain Guénoche, Bruno Leclerc, Vladimir Makarenkov
1998	J	`jnl`	On some relations between 2-trees and tree metrics. Discret. Math. Bruno Leclerc, Vladimir Makarenkov
1996	—	`conf`	Circular orders of tree metrics, and their uses for the reconstruction and fitting of phylogenetic trees. Mathematical Hierarchies and Biology Vladimir Makarenkov, Bruno Leclerc