Vladimir Brusic

89 papers A 1B 6C 4Misc 1Journal 43Unranked 34

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Correlation-based feature selection of single cell transcriptomics data from multiple sources. J. Big Data Nenad S. Mitic, Sasa N. Malkov, Mirjana M. Maljkovic, Aleksandar Veljkovic, Ivan Lj. Cukic, Xin Lin, Minjie Lyu, Vladimir Brusic
2024	—	`conf`	PREDBL6: a system for predicting C57BL/6 mouse T-cell epitopes. BIBM Zitian Zhen, Yi Zeng, Guancheng Huang, Lou Chitkushev, Vladimir Brusic, Derin B. Keskin, Guanglan Zhang
2023	J	`jnl`	A privacy preserving framework for federated learning in smart healthcare systems. Inf. Process. Manag. Wenshuo Wang, Xu Li, Xiuqin Qiu, Xiang Zhang, Jindong Zhao, Vladimir Brusic
2022	B	`conf`	Ethically Informed Software Process for Smart Health Home. CBMS Xiang Zhang, Matthew Pike, Nasser Mustafa, Vladimir Brusic
2022	J	`jnl`	Multi-AP and Test Point Accuracy of the Results in WiFi Indoor Localization. Sensors Shuyu Li, Sherif Welsen, Vladimir Brusic
2022	B	`conf`	Social Impact of Smart Environments: Software Engineering Perspectives and Challenges. COMPSAC Stuart McDonald, Dave Towey, Vladimir Brusic
2022	B	`conf`	The development of ethically informed standards for intelligent monitoring systems of electric machines. COMPSAC Kun Shang, Stuart McDonald, Giampaolo Buticchi, Vladimir Brusic
2021	—	`conf`	Applications of single cell profiles of PBMC: Improvements of cell type classification. BIBM Luning Yang, Yihan Zhang, Nenad S. Mitic, Derin B. Keskin, Guanglan Zhang, Lubomir T. Chitkushev, Richard Rankin, Vladimir Brusic
2021	—	`conf`	Classification of Single Cell Types using Small Sets of Expressed Genes: Comparative Analysis of Supervised Machine Learning Methods. BIBM Aleksandar Veljkovic, Mirjana M. Maljkovic, Nenad S. Mitic, Sasa N. Malkov, Minjie Lyu, Xin Lin, Marek T. Michalewicz, Guanglan Zhang, Vladimir Brusic
2021	—	`conf`	Correctness of Cell Labels in Public Single Cell Transcriptomics Datasets. BIBM Xin Lin, Minjie Lyu, Yihan Zhang, Derin B. Keskin, Lubomir T. Chitkushev, Guanglan Zhang, Vladimir Brusic
2021	B	`conf`	Multi-Step Optimization of Indoor Localization Accuracy Using Commodity WiFi. PIMRC Shuyu Li, Sherif Welsen, Vladimir Brusic
2021	—	`conf`	PBMC Cell Classification from Single Cell mRNA Expression by Artificial Neural Networks, Profiles, Gene Markers, and Protein Markers. BIBM Minjie Lyu, Yihan Zhang, Luning Yang, Xin Lin, Yilin Li, Huan Jin, Anthony Graham Bellotti, Nenad S. Mitic, Vladimir Brusic
2021	J	`jnl`	TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes. BMC Bioinform. Guanglan Zhang, Lou Chitkushev, Lars Rønn Olsen, Derin B. Keskin, Vladimir Brusic
2020	—	`conf`	Artificial Neural Network System for Cell Classification using Single Cell RNA Expression. BIBM Xin Lin, Jiahui Zhong, Minjie Lyu, Sen Lin, Derin B. Keskin, Guanglan Zhang, Vladimir Brusic, Lou Chitkushev
2020	—	`conf`	Automation of Gene Expression Profile Analysis in Single Cell Data. BIBM Yihan Zhang, Luning Yang, Vladimir Brusic
2020	—	`conf`	Classification of PBMC cell types using scRNAseq, ANN, and incremental learning. BIBM Jiahui Zhong, Razin Abdulrauf Shaikh, Haoguo Wu, Xin Lin, Zhiwei Cao, Lou Chitkushev, Guanglan Zhang, Derin B. Keskin, Vladimir Brusic
2020	—	`conf`	Classification of Single Cell Types During Leukemia Therapy using Artificial Neural Networks. BIBM Minjie Lyu, Milena Radenkovic, Derin B. Keskin, Vladimir Brusic
2020	—	`conf`	Polyimide-Coated Fibre Bragg Grating (FBG) Sensors for Thermal Mapping of Electric Machine Windings. ICTON Kun Shang, Michael Galea, Vladimir Brusic, Serhiy Korposh, Yaping Zhang
2020	—	`conf`	Prediction of PBMC Cell Types Using scRNAseq Reference Profiles. BIBM Luning Yang, Yihan Zhang, Nenad S. Mitic, Derin B. Keskin, Guanglan Zhang, Lou Chitkushev, Vladimir Brusic
2020	—	`conf`	Single-cell mRNA Profiles in PBMC. BIBM Luning Yang, Yihan Zhang, Nenad S. Mitic, Derin B. Keskin, Guanglan Zhang, Lou Chitkushev, Vladimir Brusic
2020	—	`conf`	Tissue of origin classification from single cell mRNA expression by Artificial Neural Networks. BIBM Bangrui Zheng, Minjie Lyu, Sen Lin, Vladimir Brusic
2019	—	`conf`	Classification of Five Cell Types from PBMC Samples using Single Cell Transcriptomics and Artificial Neural Networks. BIBM Razin Abdulrauf Shaikh, Jiahui Zhong, Minjie Lyu, Sen Lin, Derin B. Keskin, Guanglan Zhang, Lou Chitkushev, Vladimir Brusic
2019	—	`conf`	Sensor Networks and Data Management in Healthcare: Emerging Technologies and New Challenges. COMPSAC (1) Matthew Pike, Nasser Mustafa, Dave Towey, Vladimir Brusic
2019	—	`conf`	TANTIGEN 2.0: an online database and analysis platform for tumor T cell antigens. BIBM Guanglan Zhang, Lou Chitkushev, Derin B. Keskin, Vladimir Brusic
2018	J	`jnl`	Elemental metabolomics. Briefings Bioinform. Ping Zhang, Constantinos A. Georgiou, Vladimir Brusic
2018	—	`conf`	Single Cell Transcriptomics Reveals Summary Patterns Specific for PBMCs and Other Cell Types. BIBM Jingjie Xu, Razin Abdulrauf Shaikh, Vladimir Brusic
2017	—	`conf`	Antidote Application: An Educational System for Treatment of Common Toxin Overdose. BCB Jon B. Long, Yingyuan Zhang, Vladimir Brusic, Lou Chitkushev, Guanglan Zhang
2017	—	`conf`	MCVdb: A database for knowledge discovery in Merkel cell polyomavirus with applications in T cell immunology and vaccinology. BIBM Guanglan Zhang, Derin B. Keskin, James A. DeCaprio, Catherine J. Wu, Lou Chitkushev, Vladimir Brusic
2015	J	`jnl`	An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression. BMC Bioinform. Luke Vandewater, Vladimir Brusic, William J. Wilson, Lance S. Macaulay, Ping Zhang
2014	—	`conf`	Antidote application: an educational system for treatment of common toxin overdose. BCB Jon Long, Yingyuan Zhang, Lubomir T. Chitkushev, Vladimir Brusic, Guanglan Zhang
2014	J	`jnl`	HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology. Database J. Biol. Databases Curation Guanglan Zhang, Angelika Riemer, Derin B. Keskin, Lou Chitkushev, Ellis L. Reinherz, Vladimir Brusic
2013	—	`conf`	Biomarkers in Immunology: from Concepts to Applications. BCB Ping Zhang, Lou Chitkushev, Vladimir Brusic, Guanglan Zhang
2013	J	`jnl`	Computational vaccinology and the ICoVax 2012 workshop. BMC Bioinform. Yongqun He, Zhiwei Cao, Anne S. De Groot, Vladimir Brusic, Christian Schönbach, Nikolai Petrovsky
2013	—	`conf`	HPVdb: a Data Mining System for Knowledge Discovery in Human Papillomavirus with Applications in T cell Immunology and Vaccinology. BCB Guanglan Zhang, Angelika Riemer, Derin B. Keskin, Lou Chitkushev, Ellis L. Reinherz, Vladimir Brusic
2013	—	`conf`	Landscape of neutralizing assessment of monoclonal antibodies against dengue virus. BCB Jing Sun, Guanglan Zhang, Lars Rønn Olsen, Ellis L. Reinherz, Vladimir Brusic
2012	J	`jnl`	Immune System Modeling and Related Pathologies. Comput. Math. Methods Medicine Francesco Pappalardo, Vladimir Brusic, Holger Fröhlich
2012	J	`jnl`	InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinform. Christian Schönbach, Sissades Tongsima, Jonathan H. Chan, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan
2011	—	`conf`	A cDNA microarray for rapid and economical identification of HLA profiles of individuals. BIBM Workshops Guanglan Zhang, Ellis L. Reinherz, Derin B. Keskin, Vladimir Brusic
2011	J	`jnl`	PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments. BMC Bioinform. David S. DeLuca, Derin B. Keskin, Guang Zhang, Ellis L. Reinherz, Vladimir Brusic
2011	—	`conf`	PRED BCB Guanglan Zhang, Melisa L. Budde, Jennifer J. Lhost, David H. O'Connor, William H. Hildebrand, Vladimir Brusic
2011	—	`conf`	Probe design optimization of HLA microarray: Data cleaning of probe signals from cDNA tiling microarray: Outlier detection, noise reduction, and identification of uninformative probes in HLA typing application. BIBM Workshops Esma Dilek, Tanya Zlateva, Guanglan Zhang, Lubomir T. Chitkushev, Jae Young Lee, Vladimir Brusic
2011	—	`conf`	Visualization tools for presenting and analysis of global landscapes of vaccine targets. BIBM Workshops Suresh Kalathur, Vladimir Brusic, Guanglan Zhang, Lubomir T. Chitkushev, Tanya Zlateva
2010	J	`jnl`	Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes. IEEE ACM Trans. Comput. Biol. Bioinform. Liwen You, Vladimir Brusic, Marcus Gallagher, Mikael Bodén
2009	J	`jnl`	ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings Bioinform. Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew P. J. Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic
2009	—	`conf`	The ImmunoGrid Simulator: How to Use It. CIBB Francesco Pappalardo, Mark D. Halling-Brown, Marzio Pennisi, Ferdinando Chiacchio, Clare Sansom, Adrian J. Shepherd, David S. Moss, Santo Motta, Vladimir Brusic
2008	—	`conf`	A Hybrid Model for Prediction of Peptide Binding to MHC Molecules. ICONIP (1) Ping Zhang, Vladimir Brusic, Kaye E. Basford
2008	J	`jnl`	Critical technologies for bioinformatics. Briefings Bioinform. Vladimir Brusic, Shoba Ranganathan
2008	J	`jnl`	Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinform. Honghuang Lin, Guanglan Zhang, Songsak Tongchusak, Ellis L. Reinherz, Vladimir Brusic
2008	J	`jnl`	Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinform. Guanglan Zhang, Asif M. Khan, Kellathur N. Srinivasan, A. T. Heiny, Kenneth X. Lee, Chee Keong Kwoh, J. Thomas August, Vladimir Brusic
2008	J	`jnl`	Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinform. Olivo Miotto, A. T. Heiny, Tin Wee Tan, J. Thomas August, Vladimir Brusic
2008	J	`jnl`	Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. BMC Bioinform. Olivo Miotto, Tin Wee Tan, Vladimir Brusic
2007	J	`jnl`	Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. BMC Bioinform. Menaka Rajapakse, Bertil Schmidt, Feng Lin, Vladimir Brusic
2007	J	`jnl`	The growth of bioinformatics. Briefings Bioinform. Vladimir Brusic
2007	—	`conf`	Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. PRIB Liwen You, Ping Zhang, Mikael Bodén, Vladimir Brusic
2006	—	`conf`	Extreme Learning Machine for Predicting HLA-Peptide Binding. ISNN (2) Stephanus Daniel Handoko, Chee Keong Kwoh, Yew-Soon Ong, Guanglan Zhang, Vladimir Brusic
2006	C	`conf`	Functional Prediction of Snake Neurotoxins. ICARCV Seng Hong Seah, Chee Keong Kwoh, Vladimir Brusic, Meena Kishore Sakharkar, Geok See Ng
2006	—	`conf`	Incremental Maintenance of Biological Databases Using Association Rule Mining. PRIB Kai-Tak Lam, Judice L. Y. Koh, Bharadwaj Veeravalli, Vladimir Brusic
2006	J	`jnl`	Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. BMC Bioinform. Asif M. Khan, A. T. Heiny, Kenneth X. Lee, Kellathur N. Srinivasan, Tin Wee Tan, J. Thomas August, Vladimir Brusic
2006	—	`conf`	Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs. EvoWorkshops Menaka Rajapakse, Bertil Schmidt, Vladimir Brusic
2006	J	`jnl`	Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. Bioinform. Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan
2005	C	`conf`	Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm. IDEAL Menaka Rajapakse, Lonce L. Wyse, Bertil Schmidt, Vladimir Brusic
2005	C	`conf`	Extraction by Example: Induction of Structural Rules for the Analysis of Molecular Sequence Data from Heterogeneous Sources. IDEAL Olivo Miotto, Tin Wee Tan, Vladimir Brusic
2005	J	`jnl`	MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res. Guanglan Zhang, Asif M. Khan, Kellathur N. Srinivasan, J. Thomas August, Vladimir Brusic
2005	J	`jnl`	Neural Models for Predicting Viral Vaccine Targets. J. Bioinform. Comput. Biol. Guanglan Zhang, Asif M. Khan, Kellathur N. Srinivasan, J. Thomas August, Vladimir Brusic
2005	J	`jnl`	PRED Nucleic Acids Res. Guanglan Zhang, Kellathur N. Srinivasan, Anitha Veeramani, J. Thomas August, Vladimir Brusic
2005	C	`conf`	Predictive Vaccinology: Optimisation of Predictions Using Support Vector Machine Classifiers. IDEAL Ivana Bozic, Guanglan Zhang, Vladimir Brusic
2004	J	`jnl`	ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res. Manisha Brahmachary, S. P. T. Krishnan, Judice L. Y. Koh, Asif M. Khan, Seng Hong Seah, Tin Wee Tan, Vladimir Brusic, Vladimir B. Bajic
2004	J	`jnl`	CysView: protein classification based on cysteine pairing patterns. Nucleic Acids Res. Johann Lenffer, Paulo Lai, Wafaa El Mejaber, Asif M. Khan, Judice L. Y. Koh, Paul T. J. Tan, Seng Hong Seah, Vladimir Brusic
2004	—	`conf`	Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens. ISMB/ECCB (Supplement of Bioinformatics) Kellathur N. Srinivasan, Guanglan Zhang, Asif M. Khan, J. Thomas August, Vladimir Brusic
2004	J	`jnl`	Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach. Bioinform. Joyce Phui Yee Siew, Asif M. Khan, Paul T. J. Tan, Judice L. Y. Koh, Seng Hong Seah, Chuay Yeng Koo, Siaw Ching Chai, Arunmozhiarasi Armugam, Vladimir Brusic, Kandiah Jeyaseelan
2003	J	`jnl`	Bioinformatic strategies for better understanding of immune function. Silico Biol. Nikolai Petrovsky, Christian Schönbach, Vladimir Brusic
2003	J	`jnl`	Bioinformatics for Venom and Toxin Sciences. Briefings Bioinform. Paul T. J. Tan, Asif M. Khan, Vladimir Brusic
2003	J	`jnl`	From Immunoinformatics to Immunomics. J. Bioinform. Comput. Biol. Vladimir Brusic
2003	B	`conf`	From Informatics to Bioinformatics. APBC Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong
2002	J	`jnl`	An Intelligent System for Vertebrate Promoter Recognition. IEEE Intell. Syst. Vladimir B. Bajic, Allen Chong, Seng Hong Seah, Vladimir Brusic
2002	J	`jnl`	Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. Informatica (Slovenia) Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou
2002	J	`jnl`	Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinform. Vladimir B. Bajic, Seng Hong Seah, Allen Chong, Guanglan Zhang, Judice L. Y. Koh, Vladimir Brusic
2002	J	`jnl`	FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res. Christian Schönbach, Judice L. Y. Koh, Darren R. Flower, Limsoon Wong, Vladimir Brusic
2000	J	`jnl`	Data Warehousing in Molecular Biology. Briefings Bioinform. Christian Schönbach, Peter Kowalski-Saunders, Vladimir Brusic
2000	J	`jnl`	FIMM, a database of functional molecular immunology. Nucleic Acids Res. Christian Schönbach, Judice L. Y. Koh, Xin Sheng, Limsoon Wong, Vladimir Brusic
1999	B	`conf`	Artificial neural network applications in immunology. IJCNN Vladimir Brusic, John Zeleznikow
1999	J	`jnl`	Knowledge discovery and data mining in biological databases. Knowl. Eng. Rev. Vladimir Brusic, John Zeleznikow
1998	J	`jnl`	A neural network model approach to the study of human TAP transporter. Silico Biol. Vladimir Brusic, Peter van Endert, John Zeleznikow, Soizic Daniel, Jürgen Hammer, Nikolai Petrovsky
1998	J	`jnl`	MHCPEP, a database of MHC-binding peptides: update 1997. Nucleic Acids Res. Vladimir Brusic, George B. Rudy, Leonard C. Harrison
1998	Misc	`conf`	MHCWeb: converting a WWW database into a knowledge-based collaborative environment. AMIA Lawrence S. Hon, Neil F. Abernethy, Vladimir Brusic, Jenny Chai, Russ B. Altman
1998	J	`jnl`	Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network. Bioinform. Vladimir Brusic, George B. Rudy, G. Honeyman, Jürgen Hammer, Leonard C. Harrison
1997	A	`conf`	Application of Genetic Search in Derivation of Matrix Models of Peptide Binding to MHC Molecules. ISMB Vladimir Brusic, Christian Schönbach, Masafumi Takiguchi, Victor Ciesielski, Leonard C. Harrison
1997	J	`jnl`	MHCPEP, a database of MHC-binding peptides: update 1996. Nucleic Acids Res. Vladimir Brusic, George B. Rudy, Anthony P. Kyne, Leonard C. Harrison
1996	J	`jnl`	MHCPEP--a database of MHC-binding peptides: update 1995. Nucleic Acids Res. Vladimir Brusic, George B. Rudy, Anthony P. Kyne, Leonard C. Harrison