Vladimir B. Bajic

89 papers A 1B 5Journal 80Unranked 3

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning. J. Cheminformatics Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
2021	J	`jnl`	Machine Learning Methods and Qualimetric Approach to Determine the Conditions for Train Students in the Field of Environmental and Economic Activities. Int. J. Emerg. Technol. Learn. Artem S. Kasianov, Elena Gafarova, Vladimir B. Bajic, Maxim Gafarov, Darya Gordeeva
2020	J	`jnl`	Automated Counting of Colony Forming Units Using Deep Transfer Learning From a Model for Congested Scenes Analysis. IEEE Access Somayah Albaradei, Francesco Napolitano, Mahmut Uludag, Maha A. Thafar, Sara Napolitano, Magbubah Essack, Vladimir B. Bajic, Xin Gao
2020	—	`conf`	Computational Drug-target Interaction Prediction based on Graph Embedding and Graph Mining. ICBBB Maha A. Thafar, Somayah Albaradei, Rawan S. Olayan, Haitham Ashoor, Magbubah Essack, Vladimir B. Bajic
2020	J	`jnl`	DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques. J. Cheminformatics Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack
2020	J	`jnl`	Proteome-level assessment of origin, prevalence and function of leucine-aspartic acid (LD) motifs. Bioinform. Tanvir Alam, Meshari Alazmi, Rayan Naser, Franceline Huser, Afaque A. Momin, Veronica Astro, Seungbeom Hong, Katarzyna W. Walkiewicz, Christian G. Canlas, Raphaël Huser, Amal J. Ali, Jasmeen Merzaban, Antonio Adamo, Mariusz Jaremko, Lukasz Jaremko, Vladimir B. Bajic, Xin Gao, Stefan T. Arold
2019	J	`jnl`	Characterization and identification of long non-coding RNAs based on feature relationship. Bioinform. Guangyu Wang, Hongyan Yin, Boyang Li, Chunlei Yu, Fan Wang, Xingjian Xu, Jiabao Cao, Yiming Bao, Liguo Wang, Amir Ali Abbasi, Vladimir B. Bajic, Lina Ma, Zhang Zhang
2019	J	`jnl`	DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions. Bioinform. Manal Kalkatawi, Arturo Magana-Mora, Boris R. Jankovic, Vladimir B. Bajic
2019	J	`jnl`	LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Res. Lina Ma, Jiabao Cao, Lin Liu, Qiang Du, Zhao Li, Dong Zou, Vladimir B. Bajic, Zhang Zhang
2019	—	`conf`	Metastatic State of Colorectal Cancer can be Accurately Predicted with Methylome. ICBRA Somayah Albaradei, Maha A. Thafar, Christophe Van Neste, Magbubah Essack, Vladimir B. Bajic
2018	J	`jnl`	DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. Bioinform. Rawan S. Olayan, Haitham Ashoor, Vladimir B. Bajic
2018	J	`jnl`	DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. Bioinform. Rawan S. Olayan, Haitham Ashoor, Vladimir B. Bajic
2018	J	`jnl`	HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. Nucleic Acids Res. Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Ruslan N. Sharipov, Alla D. Fedorova, Eugene I. Rumynskiy, Yulia A. Medvedeva, Arturo Magana-Mora, Vladimir B. Bajic, Dmitri A. Papatsenko, Fedor A. Kolpakov, Vsevolod J. Makeev
2018	J	`jnl`	Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PLoS Comput. Biol. J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume
2018	J	`jnl`	TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers. Genom. Proteom. Bioinform. Dimitrios Kleftogiannis, Haitham Ashoor, Vladimir B. Bajic
2017	J	`jnl`	DANNP: an efficient artificial neural network pruning tool. PeerJ Comput. Sci. Mona Alshahrani, Othman Soufan, Arturo Magana-Mora, Vladimir B. Bajic
2017	J	`jnl`	Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
2017	J	`jnl`	TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions. Nucleic Acids Res. Sebastian Schmeier, Tanvir Alam, Magbubah Essack, Vladimir B. Bajic
2017	J	`jnl`	bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli. Bioinform. Ilham A. Shahmuradov, Rozaimi Mohamad Razali, Salim Bougouffa, Aleksandar Radovanovic, Vladimir B. Bajic
2016	J	`jnl`	DASPfind: new efficient method to predict drug-target interactions. J. Cheminformatics Wail Ba-alawi, Othman Soufan, Magbubah Essack, Panos Kalnis, Vladimir B. Bajic
2016	J	`jnl`	DESM: portal for microbial knowledge exploration systems. Nucleic Acids Res. Adil Salhi, Magbubah Essack, Aleksandar Radovanovic, Benoit Marchand, Salim Bougouffa, André Antunes, Marta Filipa Simões, Feras F. Lafi, Olaa A. Motwalli, Ameerah Bokhari, Tariq Malas, Soha Al Amoudi, Ghofran Othum, Intikhab Alam, Katsuhiko Mineta, Xin Gao, Robert Hoehndorf, John A. C. Archer, Takashi Gojobori, Vladimir B. Bajic
2016	J	`jnl`	DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning. J. Cheminformatics Othman Soufan, Wail Ba-alawi, Moataz Afeef, Magbubah Essack, Panos Kalnis, Vladimir B. Bajic
2016	J	`jnl`	HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res. Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Anastasiia V. Soboleva, Artem S. Kasianov, Haitham Ashoor, Wail Ba-alawi, Vladimir B. Bajic, Yulia A. Medvedeva, Fedor A. Kolpakov, Vsevolod J. Makeev
2016	J	`jnl`	Progress and challenges in bioinformatics approaches for enhancer identification. Briefings Bioinform. Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic
2015	J	`jnl`	DDMGD: the database of text-mined associations between genes methylated in diseases from different species. Nucleic Acids Res. Arwa Bin Raies, Hicham Mansour, Roberto Incitti, Vladimir B. Bajic
2015	J	`jnl`	DENdb: database of integrated human enhancers. Database J. Biol. Databases Curation Haitham Ashoor, Dimitrios Kleftogiannis, Aleksandar Radovanovic, Vladimir B. Bajic
2015	J	`jnl`	Distinct profiling of antimicrobial peptide families. Bioinform. Abdullah M. Khamis, Magbubah Essack, Xin Gao, Vladimir B. Bajic
2015	J	`jnl`	First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea. Genom. Proteom. Bioinform. André Antunes, Intikhab Alam, Marta Filipa Simões, Camille Daniels, Ari J. S. Ferreira, Rania Siam, Hamza El-Dorry, Vladimir B. Bajic
2015	J	`jnl`	LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Res. Lina Ma, Ang Li, Dong Zou, Xingjian Xu, Lin Xia, Jun Yu, Vladimir B. Bajic, Zhang Zhang
2015	J	`jnl`	Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea - A Metagenomic Approach. Genom. Proteom. Bioinform. Marta Filipa Simões, André Antunes, Cristiane A. Ottoni, Mohammad Shoaib Amini, Intikhab Alam, Hanin Alzubaidy, Noor-Azlin Mokhtar, John A. C. Archer, Vladimir B. Bajic
2015	J	`jnl`	The Value and Significance of Metagenomics of Marine Environments. Genom. Proteom. Bioinform. Fangqing Zhao, Vladimir B. Bajic
2014	J	`jnl`	DEOP: a database on osmoprotectants and associated pathways. Database J. Biol. Databases Curation Salim Bougouffa, Aleksandar Radovanovic, Magbubah Essack, Vladimir B. Bajic
2013	J	`jnl`	Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences. Bioinform. Manal Kalkatawi, Farania Rangkuti, Michael Schramm, Boris R. Jankovic, Allan Kamau, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic
2013	J	`jnl`	Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants. Bioinform. Arturo Magana-Mora, Haitham Ashoor, Boris R. Jankovic, Allan Kamau, Karim Awara, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic
2013	J	`jnl`	Dragon exploration system on marine sponge compounds interactions. J. Cheminformatics Sunil Sagar, Mandeep Kaur, Aleksandar Radovanovic, Vladimir B. Bajic
2013	J	`jnl`	HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. Bioinform. Haitham Ashoor, Aurélie Hérault, Aurélie Kamoun, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot, Valentina Boeva
2013	J	`jnl`	HOCOMOCO: a comprehensive collection of human transcription factor binding sites models. Nucleic Acids Res. Ivan V. Kulakovskiy, Yulia A. Medvedeva, Ulf Schaefer, Artem S. Kasianov, Ilya E. Vorontsov, Vladimir B. Bajic, Vsevolod J. Makeev
2013	J	`jnl`	PIMiner: a web tool for extraction of protein interactions from biomedical literature. Int. J. Data Min. Bioinform. Rajesh Chowdhary, Jinfeng Zhang, Sin Lam Tan, Daniel E. Osborne, Vladimir B. Bajic, Jun S. Liu
2013	J	`jnl`	Poly(A) motif prediction using spectral latent features from human DNA sequences. Bioinform. Bo Xie, Boris R. Jankovic, Vladimir B. Bajic, Le Song, Xin Gao
2012	J	`jnl`	DAMPD: a manually curated antimicrobial peptide database. Nucleic Acids Res. Vijayaraghava Seshadri Sundararajan, Musa Nur Gabere, Ashley Pretorius, Saleem Adam, Alan Christoffels, Minna Lehväslaiho, John A. C. Archer, Vladimir B. Bajic
2012	J	`jnl`	Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences. Bioinform. Manal Kalkatawi, Farania Rangkuti, Michael Schramm, Boris R. Jankovic, Allan Kamau, Rajesh Chowdhary, John A. C. Archer, Vladimir B. Bajic
2012	J	`jnl`	Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model. BMC Syst. Biol. Magbubah Essack, Cameron MacPherson, Sebastian Schmeier, Vladimir B. Bajic
2012	J	`jnl`	Protein domain recurrence and order can enhance prediction of protein functions. Bioinform. Mario Abdel Messih, Meghana Chitale, Vladimir B. Bajic, Daisuke Kihara, Xin Gao
2011	J	`jnl`	An Optimized Recursive Learning Algorithm for Three-Layer Feedforward Neural Networks For Mimo Nonlinear System Identifications. Intell. Autom. Soft Comput. Daohang Sha, Vladimir B. Bajic
2011	J	`jnl`	DDPC: Dragon Database of Genes associated with Prostate Cancer. Nucleic Acids Res. Monique Maqungo, Mandeep Kaur, Samuel K. Kwofie, Aleksandar Radovanovic, Ulf Schaefer, Sebastian Schmeier, Ekow Oppon, Alan Christoffels, Vladimir B. Bajic
2011	A	`conf`	Highly scalable SC Benoit Marchand, Vladimir B. Bajic, Dinesh K. Kaushik
2011	J	`jnl`	In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer. BMC Syst. Biol. Mandeep Kaur, Cameron MacPherson, Sebastian Schmeier, Kothandaraman Narasimhan, Mahesh Choolani, Vladimir B. Bajic
2011	J	`jnl`	Network analysis of microRNAs and their regulation in human ovarian cancer. BMC Syst. Biol. Sebastian Schmeier, Ulf Schaefer, Magbubah Essack, Vladimir B. Bajic
2011	J	`jnl`	TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins. Nucleic Acids Res. Ulf Schaefer, Sebastian Schmeier, Vladimir B. Bajic
2010	J	`jnl`	An optimized recursive learning algorithm for three-layer feedforward neural networks for mimo nonlinear system identifications CoRR Daohang Sha, Vladimir B. Bajic
2010	J	`jnl`	Genome-wide analysis of regions similar to promoters of histone genes. BMC Syst. Biol. Rajesh Chowdhary, Vladimir B. Bajic, Difeng Dong, Limsoon Wong, Jun S. Liu
2009	J	`jnl`	Database for exploration of functional context of genes implicated in ovarian cancer. Nucleic Acids Res. Mandeep Kaur, Aleksandar Radovanovic, Magbubah Essack, Ulf Schaefer, Monique Maqungo, Tracey Kibler, Sebastian Schmeier, Alan Christoffels, Kothandaraman Narasimhan, Mahesh Choolani, Vladimir B. Bajic
2008	B	`conf`	Modeling transcription termination of selected gene groups using support vector machine. IJCNN Jian-Xin Xu, B. Ashok, Sanjib Kumar Panda, Vladimir B. Bajic
2007	J	`jnl`	Editorial. Int. J. Comput. Syst. Signals D. Petkov, Vladimir B. Bajic
2007	J	`jnl`	KBERG: KnowledgeBase for Estrogen Responsive Genes. Nucleic Acids Res. Suisheng Tang, Zhuo Zhang, Sin Lam Tan, Man-Hung Eric Tang, Arun Prashanth Kumar, Sureshkumar Ramadoss, Vladimir B. Bajic
2006	J	`jnl`	Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes. BMC Bioinform. Manisha Brahmachary, Christian Schönbach, Liang Yang, Enli Huang, Sin Lam Tan, Rajesh Chowdhary, S. P. T. Krishnan, Chin-Yo Lin, David A. Hume, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B. Bajic
2006	J	`jnl`	Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures. Bioinform. Rajesh Chowdhary, Sin Lam Tan, R. Ayesha Ali, Brent Boerlage, Limsoon Wong, Vladimir B. Bajic
2006	J	`jnl`	Editorial. Int. J. Comput. Syst. Signals D. Petkov, Vladimir B. Bajic
2006	J	`jnl`	Finding functional promoter motifs by computational methods: a word of caution. Int. J. Bioinform. Res. Appl. Rajesh Chowdhary, Limsoon Wong, Vladimir B. Bajic
2006	—	`conf`	Intelligent Extraction Versus Advanced Query: Recognize Transcription Factors from Databases. PRIB Zhuo Zhang, Merlin Veronika, See-Kiong Ng, Vladimir B. Bajic
2005	B	`conf`	Comparison of core promoters in Fugu rubripes and human. APBC Sin Lam Tan, Vidhu Choudhary, Alan Christoffels, Byrappa Venkatesh, Vladimir B. Bajic
2005	B	`conf`	Modeling 5' regions of histone genes using Bayesian networks. APBC Rajesh Chowdhary, R. Ayesha Ali, Vladimir B. Bajic
2005	J	`jnl`	Promoter modeling: the case study of mammalian histone promoters. Bioinform. Rajesh Chowdhary, R. Ayesha Ali, Werner Albig, Detlef Doenecke, Vladimir B. Bajic
2005	J	`jnl`	Some Implementation Issues of Heuristic Methods for Motif Extraction from DNA Sequences. Int. J. Comput. Syst. Signals Liang Yang, Enli Huang, Vladimir B. Bajic
2004	J	`jnl`	ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res. Manisha Brahmachary, S. P. T. Krishnan, Judice L. Y. Koh, Asif M. Khan, Seng Hong Seah, Tin Wee Tan, Vladimir Brusic, Vladimir B. Bajic
2004	J	`jnl`	Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining. Nucleic Acids Res. Hong Pan, Li Zuo, Vidhu Choudhary, Zhuo Zhang, Shoi Houi Leow, Fui Teen Chong, Yingliang Huang, Victor Wui Siong Ong, Bijayalaxmi Mohanty, Sin Lam Tan, S. P. T. Krishnan, Vladimir B. Bajic
2004	J	`jnl`	ERGDB: Estrogen Responsive Genes Database. Nucleic Acids Res. Suisheng Tang, Hao Han, Vladimir B. Bajic
2003	B	`conf`	A fuzzy logic tuned polynomial based predictor for processes having long dead-times. FUZZ-IEEE Pobalan Govender, Vladimir B. Bajic
2003	J	`jnl`	Content analysis of the core promoter region of human genes. Silico Biol. Vladimir B. Bajic, Vidhu Choudhary, Chuan Koh Hock
2003	J	`jnl`	Dragon ERE Finder version 2: a tool for accurate detection and analysis of estrogen response elements in vertebrate genomes. Nucleic Acids Res. Vladimir B. Bajic, Sin Lam Tan, Allen Chong, Suisheng Tang, Anders Ström, Jan-Åke Gustafsson, Chin-Yo Lin, Edison T. Liu
2003	J	`jnl`	Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes. Nucleic Acids Res. Vladimir B. Bajic, Seng Hong Seah
2003	J	`jnl`	Editorial: Broadening the Scope of IJCSS. Int. J. Comput. Syst. Signals Vladimir B. Bajic, D. Petkov
2003	J	`jnl`	FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes. Nucleic Acids Res. Allen Chong, Guanglan Zhang, Vladimir B. Bajic
2003	B	`conf`	From Informatics to Bioinformatics. APBC Vladimir B. Bajic, Vladimir Brusic, Jinyan Li, See-Kiong Ng, Limsoon Wong
2002	J	`jnl`	An Intelligent System for Vertebrate Promoter Recognition. IEEE Intell. Syst. Vladimir B. Bajic, Allen Chong, Seng Hong Seah, Vladimir Brusic
2002	J	`jnl`	An on-line hybrid learning algorithm for multilayer perceptron in identification problems. Comput. Electr. Eng. Daohang Sha, Vladimir B. Bajic
2002	J	`jnl`	Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. Informatica (Slovenia) Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou
2002	J	`jnl`	Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinform. Vladimir B. Bajic, Seng Hong Seah, Allen Chong, Guanglan Zhang, Judice L. Y. Koh, Vladimir Brusic
2002	J	`jnl`	Information and sequence extraction around the 5'-end and translation initiation site of human genes. Silico Biol. Allen Chong, Guanglan Zhang, Vladimir B. Bajic
2002	J	`jnl`	New model and sliding mode control of hydraulic elevator velocity tracking system. Simul. Pract. Theory Daohang Sha, Vladimir B. Bajic, Huayong Yang
2000	J	`jnl`	AI-based discrete sliding-mode control for real-time implementation. Int. J. Comput. Syst. Signals Vladimir B. Bajic, Daohang Sha, Xinzhong Li, Xingmei Wang
2000	J	`jnl`	Comparing the Success of Different Prediction Software in Sequence Analysis: A Review. Briefings Bioinform. Vladimir B. Bajic
2000	J	`jnl`	Editorial message from the Editor-in-Chief. Int. J. Comput. Syst. Signals Vladimir B. Bajic
2000	J	`jnl`	Editorial message. Int. J. Comput. Syst. Signals Vladimir B. Bajic
2000	J	`jnl`	Genetic algorithms and extraction of rules for detection of short DNA motifs. Int. J. Comput. Syst. Signals P. Y. Tabakov, Vladimir B. Bajic
2000	J	`jnl`	Nonlinear self-turning controller for Hammerstein plants with application to a pressure tank. Int. J. Comput. Syst. Signals Zi Ma, Arthur Jutan, Vladimir B. Bajic
2000	J	`jnl`	Robust discrete adaptive input-output-based sliding mode controller. Int. J. Syst. Sci. Daohang Sha, Vladimir B. Bajic
2000	J	`jnl`	Special issue: Computer-Based Control Systems. Int. J. Comput. Syst. Signals Arthur Jutan, Vladimir B. Bajic
1999	J	`jnl`	Adaptive On-line ANN Learning Algorithm and Application to Identification of Non-linear Systems. Informatica (Slovenia) Daohang Sha, Vladimir B. Bajic