Vladimir A. Ivanisenko

30 papers B 1Journal 27Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
AIMarkerFinder: AI-Assisted Marker Discovery Based on an Integrated Approach of Autoencoders and Kolmogorov-Arnold Networks.
Informatics
Pavel S. Demenkov, Timofey V. Ivanisenko, Vladimir A. Ivanisenko
2024 J jnl
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder.
J. Integr. Bioinform.
Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek
2024 J jnl
AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling.
Database J. Biol. Databases Curation
Yi Shen, Liya Liu, Enyan Liu, Sida Li, Yuriy L. Orlov, Vladimir A. Ivanisenko, Ming Chen
2024 J jnl
Integrating omics databases for enhanced crop breeding.
J. Integr. Bioinform.
Haoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov, Ming Chen
2024 J jnl
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection.
J. Integr. Bioinform.
Evgeniya A. Antropova, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko
2020 J jnl
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature.
BMC Bioinform.
Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostyanov, Vladimir A. Ivanisenko
2019 J jnl
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression.
BMC Bioinform.
Vladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik
2018 J jnl
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks.
J. Integr. Bioinform.
Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina
2018 J jnl
Integrative Analysis of Co-Morbid Multifactorial Diseases.
J. Integr. Bioinform.
Ralf Hofestädt, Vladimir A. Ivanisenko
2018 J jnl
Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases.
J. Integr. Bioinform.
Elena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin
2018 J jnl
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature.
J. Integr. Bioinform.
Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko
2018 J jnl
shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma.
J. Integr. Bioinform.
Tatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko
2017 J jnl
A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks.
J. Bioinform. Comput. Biol.
Olga V. Petrovskaya, Evgeny D. Petrovskiy, Inna N. Lavrik, Vladimir A. Ivanisenko
2017 J jnl
SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes.
J. Bioinform. Comput. Biol.
Irina V. Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko
2015 J jnl
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology.
BMC Syst. Biol.
Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov
2015 J jnl
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome).
BMC Syst. Biol.
Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko
2015 J jnl
Permanent proteins in the urine of healthy humans during the Mars-500 experiment.
J. Bioinform. Comput. Biol.
Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2014 — ch.
Text Mining on PubMed.
Approaches in Integrative Bioinformatics
Timofey V. Ivanisenko, Pavel S. Demenkov, Vladimir A. Ivanisenko
2013 B conf
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications.
PaCT
Konstantin Kozlov, Nikita Ivanisenko, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov
2013 J jnl
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets.
J. Bioinform. Comput. Biol.
Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2012 J jnl
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem.
Silico Biol.
Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2012 J jnl
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development.
BioData Min.
Nicolas Turenne, Evgeny S. Tiys, Vladimir A. Ivanisenko, Nikolay Yudin, Elena Ignatieva, Damien Valour, Séverine A. Degrelle, Isabelle Hue
2012 J jnl
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes.
Nucleic Acids Res.
Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko
2010 J jnl
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches.
J. Integr. Bioinform.
Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt
2007 — conf
Analysis of Protein Functional Site Distribution on Gene Structure.
BIOCOMP
Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
2007 J jnl
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture.
J. Bioinform. Comput. Biol.
Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko, Nikolay A. Kolchanov
2007 J jnl
Phylogenetic Analysis of the p53 and p63/p73 Gene Families.
Silico Biol.
Sergey S. Pintus, Eduard S. Fomin, Ivan S. Oshurkov, Vladimir A. Ivanisenko
2005 J jnl
PDBSite: a database of the 3D structure of protein functional sites.
Nucleic Acids Res.
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
2005 J jnl
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families.
Nucleic Acids Res.
Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov
2004 J jnl
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins.
Nucleic Acids Res.
Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov