Virginie Uhlmann

35 papers B 1Misc 1Journal 24Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
Are Vision Foundation Models Foundational for Electron Microscopy Image Segmentation?
CoRR
Caterina Fuster-Barceló, Virginie Uhlmann
2025 — conf
A Comparison of Data-Driven Shape Quantification Methods for 2D Microscopy Images.
ICCVW
Anna Foix Romero, Alexander Krull, Virginie Uhlmann
2025 J jnl
A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.
PLoS Comput. Biol.
Weheliye H. Weheliye, Javier Rodriguez, Luigi Feriani, Avelino Javer, Virginie Uhlmann, André E. X. Brown
2025 J jnl
ShapeEmbed: a self-supervised learning framework for 2D contour quantification.
CoRR
Anna Foix Romero, Craig Russell, Alexander Krull, Virginie Uhlmann
2025 J jnl
bia-binder: a web-native cloud compute service for the bioimage analysis community.
Bioinform.
Craig Russell, Jean-Marie Burel, Awais Athar, Simon Li, Ugis Sarkans, Jason R. Swedlow, Alvis Brazma, Matthew Hartley, Virginie Uhlmann
2024 J jnl
Noise contrastive estimation with soft targets for conditional models.
CoRR
Johannes Hugger, Virginie Uhlmann
2023 J jnl
Simulating structurally variable nuclear pore complexes for microscopy.
Bioinform.
Maria Theiss, Jean-Karim Hériché, Craig Russell, David Helekal, Alisdair Soppitt, Jonas Ries, Jan Ellenberg, Alvis Brazma, Virginie Uhlmann
2022 J jnl
A Practical Guide to Supervised Deep Learning for Bioimage Analysis: Challenges and good practices.
IEEE Signal Process. Mag.
Virginie Uhlmann, Laurène Donati, Daniel Sage
2022 J jnl
Editorial: Methods and Tools for Bioimage Analysis.
Frontiers Comput. Sci.
Florian Levet, Virginie Uhlmann, Florian Jug
2022 J jnl
Steer'n'Detect: fast 2D template detection with accurate orientation estimation.
Bioinform.
Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage, Julien Fageot
2022 J jnl
μMatch: 3D Shape Correspondence for Biological Image Data.
Frontiers Comput. Sci.
James Klatzow, Giovanni Dalmasso, Neus Martínez-Abadías, James Sharpe, Virginie Uhlmann
2021 — conf
Aura-Net: Robust Segmentation Of Phase-Contrast Microscopy Images with Few Annotations.
ISBI
Ethan Cohen, Virginie Uhlmann
2021 J jnl
Principled Design and Implementation of Steerable Detectors.
IEEE Trans. Image Process.
Julien Fageot, Virginie Uhlmann, Zsuzsanna Püspöki, Benjamin Beck, Michael Unser, Adrien Depeursinge
2021 — conf
Splinedist: Automated Cell Segmentation With Spline Curves.
ISBI
Soham Mandal, Virginie Uhlmann
2021 J jnl
aura-net : robust segmentation of phase-contrast microscopy images with few annotations.
CoRR
Ethan Cohen, Virginie Uhlmann
2020 J jnl
Dictionary Learning for Two-Dimensional Kendall Shapes.
SIAM J. Imaging Sci.
Anna Song, Virginie Uhlmann, Julien Fageot, Michael Unser
2020 J jnl
Support and approximation properties of Hermite splines.
J. Comput. Appl. Math.
Julien Fageot, Shayan Aziznejad, Michael Unser, Virginie Uhlmann
2019 — conf
A Learning-Based Formulation of Parametric Curve Fitting for Bioimage Analysis.
ENUMATH
Soham Mandal, Virginie Uhlmann
2018 J jnl
Diverse M-Best Solutions by Dynamic Programming.
CoRR
Carsten Haubold, Virginie Uhlmann, Michael Unser, Fred A. Hamprecht
2018 J jnl
DiversePathsJ: diverse shortest paths for bioimage analysis.
Bioinform.
Virginie Uhlmann, Carsten Haubold, Fred A. Hamprecht, Michael Unser
2017 — conf
Diverse M-Best Solutions by Dynamic Programming.
GCPR
Carsten Haubold, Virginie Uhlmann, Michael Unser, Fred A. Hamprecht
2017 J jnl
Gaussian and Sparse Processes Are Limits of Generalized Poisson Processes.
CoRR
Julien Fageot, Virginie Uhlmann, Michael Unser
2017 — conf
General surface energy for spinal cord and aorta segmentation.
ISBI
Harshit Gupta, Daniel Schmitter, Virginie Uhlmann, Michael Unser
2017 J jnl
Multiresolution Subdivision Snakes.
IEEE Trans. Image Process.
Anais Badoual, Daniel Schmitter, Virginie Uhlmann, Michael Unser
2016 J jnl
CP-CHARM: segmentation-free image classification made accessible.
BMC Bioinform.
Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter
2016 J jnl
Design of Steerable Wavelets to Detect Multifold Junctions.
IEEE Trans. Image Process.
Zsuzsanna Püspöki, Virginie Uhlmann, Cédric Vonesch, Michael Unser
2016 J jnl
Hermite Snakes With Control of Tangents.
IEEE Trans. Image Process.
Virginie Uhlmann, Julien Fageot, Michael Unser
2016 J jnl
Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames.
IEEE Trans. Image Process.
Pedram Pad, Virginie Uhlmann, Michael Unser
2016 — conf
USER-friendly image-based segmentation and analysis of chromosomes.
ISBI
Virginie Uhlmann, Ricard Delgado-Gonzalo, Michael Unser, Patrik Olavi Michel, Lucia Baldi, Florian Maria Wurm
2015 J jnl
Efficient Shape Priors for Spline-Based Snakes.
IEEE Trans. Image Process.
Ricard Delgado-Gonzalo, Daniel Schmitter, Virginie Uhlmann, Michael Unser
2015 J jnl
Snakes on a Plane: A perfect snap for bioimage analysis.
IEEE Signal Process. Mag.
Ricard Delgado-Gonzalo, Virginie Uhlmann, Daniel Schmitter, Michael Unser
2015 — conf
Tip-seeking active contours for bioimage segmentation.
ISBI
Virginie Uhlmann, Michael Unser
2014 Misc conf
Exponential Hermite splines for the analysis of biomedical images.
ICASSP
Virginie Uhlmann, Ricard Delgado-Gonzalo, Costanza Conti, Lucia Romani, Michael Unser
2014 — conf
Snakes with tangent-based control and energies for bioimage analysis.
ISBI
Virginie Uhlmann, Ricard Delgado-Gonzalo, Michael Unser
2014 B conf
VOW: Variance-optimal wavelets for the steerable pyramid.
ICIP
Pedram Pad, Virginie Uhlmann, Michael Unser