Vipin Sachdeva

32 papers A 3B 1C 2Misc 3Journal 7Unranked 14

Year	Rank	Type	Title / Venue / Authors
2022	B	`conf`	Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2021	Misc	`conf`	Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
2021	—	`conf`	System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2021	Misc	`conf`	Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2020	—	`conf`	A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2020	J	`jnl`	An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva
2020	—	`—`	Efficient Parallel Algorithms for error correction and transcriptome assembly of biological sequences. Vipin Sachdeva
2020	—	`conf`	Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt
2019	J	`jnl`	Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2019	A	`conf`	Fully integrated FPGA molecular dynamics simulations. SC Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2019	—	`conf`	Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt
2017	J	`jnl`	K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. BMC Bioinform. Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
2017	—	`conf`	OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva, Martin C. Herbordt
2017	J	`jnl`	OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution. CoRR Yu-Hang Tang, Lu Lu, He Li, Constantinos Evangelinos, Leopold Grinberg, Vipin Sachdeva, George E. Karniadakis
2016	—	`conf`	A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. IPDPS Workshops Vipin Sachdeva, Srinivas Aluru, David A. Bader
2014	C	`conf`	Exploring HPC-based scientific software as a service using CometCloud. CollaborateCom Moustafa AbdelBaky, Javier Diaz Montes, Michael Johnston, Vipin Sachdeva, Richard L. Anderson, Kirk E. Jordan, Manish Parashar
2014	—	`conf`	K-mer clustering algorithm using a MapReduce approach. BIBM Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan
2014	—	`conf`	Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. IPDPS Workshops Vipin Sachdeva, Chang Sik Kim, Kirk E. Jordan, Martyn D. Winn
2013	J	`jnl`	Determination of performance characteristics of scientific applications on IBM Blue Gene/Q. IBM J. Res. Dev. Constantinos Evangelinos, Robert Walkup, Vipin Sachdeva, Kirk E. Jordan, Hormozd Gahvari, I-Hsin Chung, Michael P. Perrone, Ligang Lu, Lurng-Kuo Liu, Karen A. Magerlein
2012	Misc	`conf`	Coupling a Basin Modeling and a Seismic Code using MOAB. ICCS Mi Yan, Kirk E. Jordan, Dinesh K. Kaushik, Michael Perrone, Vipin Sachdeva, Timothy J. Tautges, John Magerlein
2012	J	`jnl`	Enabling High-Performance Computing as a Service. Computer Moustafa AbdelBaky, Manish Parashar, Hyunjoo Kim, Kirk E. Jordan, Vipin Sachdeva, James C. Sexton, Hani Jamjoom, Zon-Yin Shae, Gergina Pencheva, Reza Tavakoli, Mary F. Wheeler
2012	—	`conf`	Mesh Interface Resolution and Ghost Exchange in a Parallel Mesh Representation. IPDPS Workshops Timothy J. Tautges, Jason Kraftcheck, Nathan Bertram, Vipin Sachdeva, John Magerlein
2011	—	`conf`	p_2Matlab: Productive Parallel Matlab for the Exascale. IPDPS Workshops Vipin Sachdeva
2010	—	`ch.`	Enabling Bioinformatics Algorithms on the Cell/B.E. Processor. Scientific Computing with Multicore and Accelerators Vipin Sachdeva, Michael Kistler, Tzy-Hwa Kathy Tzeng
2010	C	`conf`	Evaluating Cell/B.E software cache for ClustalW. ISCAS Vipin Sachdeva, Michael Kistler, David A. Bader
2009	—	`conf`	Evaluating the Jaccard-Tanimoto Index on Multi-core Architectures. ICCS (1) Vipin Sachdeva, Douglas M. Freimuth, Chris Mueller
2008	J	`jnl`	Exploring the viability of the Cell Broadband Engine for bioinformatics applications. Parallel Comput. Vipin Sachdeva, Michael Kistler, Evan Speight, Tzy-Hwa Kathy Tzeng
2007	—	`conf`	Characterizing and Improving the Performance of Bioinformatics Workloads on the POWER5 Architecture. IISWC Vipin Sachdeva, Evan Speight, Mark W. Stephenson, Lei Chen
2007	A	`conf`	Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications. IPDPS Vipin Sachdeva, Michael Kistler, William Evan Speight, Tzy-Hwa Kathy Tzeng
2006	A	`conf`	Poster reception - Pairwise alignments on the cell processor. SC Vipin Sachdeva, Michael Kistler, Evan Speight
2005	—	`conf`	A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. PDCS David A. Bader, Vipin Sachdeva
2005	—	`conf`	Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops David A. Bader, Vipin Sachdeva