Vinhthuy Phan

44 papers B 1Journal 26Unranked 17
YearRankTypeTitle / Venue / Authors
2026 — conf
Using In-Class Exercise Data for Early Support of Struggling Students.
SIGCSE (1)
Kritish Pahi, Vinhthuy Phan
2025 — conf
Enhancing Student Performance Prediction In CS1 Via In-Class Coding.
SIGCSE (1)
Eric Hicks, Vinhthuy Phan, Kriangsiri Malasri
2025 J jnl
Enhancing Student Performance Prediction In CS1 Via In-Class Coding.
CoRR
Eric Hics, Vinhthuy Phan, Kriangsiri Malasri
2025 — conf
Graduate Computer Science TA Perspectives on In-Person Pedagogical Training: An Experience Report.
ITiCSE (1)
Alina Zaman, Amy Cook, Vinhthuy Phan, Alistair Windsor
2025 — conf
In-class Coding Exercises As A Mechanism To Inform Early Intervention In Programming Courses.
SIGCSE (1)
Eric Hicks, Vinhthuy Phan
2023 — conf
A Cloud-Based Technology for Conducting In-class Exercises in Data Science and Machine Learning Courses.
SIGCSE (1)
Kritish Pahi, Vinhthuy Phan
2023 — conf
A Practical Strategy for Training Graduate CS Teaching Assistants to Provide Effective Feedback.
ITiCSE (1)
Alina Zaman, Amy Cook, Vinhthuy Phan, Alistair Windsor
2022 — conf
Enabling In-Class Peer Feedback on Introductory Computer Science Coding Exercises.
SIGCSE (2)
Alina Zaman, Vinhthuy Phan, Amy Cook
2022 — conf
Improving TA Feedback on In-Class Coding Assignments for Introductory Computer Science.
ITiCSE (1)
Amy Cook, Vinhthuy Phan, Alistair Windsor
2022 — conf
Keep It Relevant! Using In-class Exercises to Predict Weekly Performance in CS1.
SIGCSE (1)
Eric Hicks, Amy Cook, Kriangsiri Malasri, Alina Zaman, Vinhthuy Phan
2022 J jnl
Representing bacteria with unique genomic signatures.
Frontiers Big Data
Diem-Trang Pham, Vinhthuy Phan
2022 — conf
Try That Again! How a Second Attempt on In-Class Coding Problems Benefits Students in CS1.
SIGCSE (1)
Amy Cook, Alina Zaman, Eric Hicks, Kriangsiri Malasri, Vinhthuy Phan
2020 — conf
Active Learning: The Almost Silver Bullet.
KSE
Eric Hicks, Quang Tran, Kriangsiri Malasri, Nam Sy Vo, Vinhthuy Phan
2020 — conf
Analysis of Short-read Aligners using Genome Sequence Complexity.
KSE
Quang Tran, Nam Sy Vo, Eric Hicks, Tin Chi Nguyen, Vinhthuy Phan
2019 J jnl
icHET: interactive visualization of cytoplasmic heteroplasmy.
Bioinform.
Vinhthuy Phan, Diem-Trang Pham, Caroline Melton, Adam J. Ramsey, Bernie J. Daigle Jr., Jennifer R. Mandel
2018 B conf
Code4Brownies: an active learning solution for teaching programming and problem solving in the classroom.
ITiCSE
Vinhthuy Phan, Eric Hicks
2018 J jnl
Leveraging known genomic variants to improve detection of variants, especially close-by Indels.
Bioinform.
Nam S. Vo, Vinhthuy Phan
2017 J jnl
An accurate and fast alignment-free method for profiling microbial communities.
J. Bioinform. Comput. Biol.
Diem-Trang Pham, Shanshan Gao, Vinhthuy Phan
2017 J jnl
Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities.
BMC Bioinform.
Quang Tran, Diem-Trang Pham, Vinhthuy Phan
2016 J jnl
Analysis of optimal alignments unfolds aligners' bias in existing variant profiles.
BMC Bioinform.
Quang Tran, Shanshan Gao, Vinhthuy Phan
2015 J jnl
A linear model for predicting performance of short-read aligners using genome complexity.
BMC Bioinform.
Quang Tran, Shanshan Gao, Nam S. Vo, Vinhthuy Phan
2015 J jnl
Alignment-free methods for metagenomic profiling.
BMC Bioinform.
Shanshan Gao, Diem-Trang Pham, Vinhthuy Phan
2015 J jnl
How genome complexity can explain the difficulty of aligning reads to genomes.
BMC Bioinform.
Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S. Vo
2015 J jnl
Improving variant calling by incorporating known genetic variants into read alignment.
BMC Bioinform.
Nam S. Vo, Vinhthuy Phan
2014 J jnl
Alignment of short reads to multiple genomes using hashing.
BMC Bioinform.
Quang Tran, Vinhthuy Phan
2014 J jnl
An integrated approach for SNP calling based on population of genomes.
BMC Bioinform.
Nam S. Vo, Quang Tran, Vinhthuy Phan
2014 J jnl
Determining gene response patterns of time series gene expression data using R.
BMC Bioinform.
Kevin L. O'kello, Vinhthuy Phan
2014 J jnl
Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response.
BMC Bioinform.
Nam S. Vo, Vinhthuy Phan
2014 J jnl
Exploiting the bootstrap method to analyze patterns of gene expression.
BMC Bioinform.
Nam S. Vo, Vinhthuy Phan
2013 — conf
A randomized algorithm for aligning DNA sequences to reference genomes.
ICCABS
Nam S. Vo, Quang Tran, Nobal B. Niraula, Vinhthuy Phan
2013 — conf
Exploiting Dependencies of Patterns in Gene Expression Analysis Using Pairwise Comparisons.
ISBRA
Nam S. Vo, Vinhthuy Phan
2013 J jnl
Using partially ordered sets to represent and predict true patterns of gene response to treatments.
BMC Bioinform.
Nam S. Vo, Vinhthuy Phan
2012 — conf
Predicting possible directed-graph patterns of gene expressions in studies involving multiple treatments.
BCB
Nam S. Vo, Vinhthuy Phan, Thomas R. Sutter
2011 J jnl
Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets.
BMC Bioinform.
Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W. Berry, Ramin Homayouni
2010 J jnl
DNA-Based Indexing.
Int. J. Nanotechnol. Mol. Comput.
Max H. Garzon, Kiran C. Bobba, Andrew Neel, Vinhthuy Phan
2010 J jnl
Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases.
Int. J. Bioinform. Res. Appl.
Vinhthuy Phan, Allen Thomas, Kriangsiri Malasri, Carrie Hayes Sutter
2010 J jnl
Synthetic gene design with a large number of hidden stops.
Int. J. Data Min. Bioinform.
Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong
2009 J jnl
Analyzing microarray Data with Transitive Directed Acyclic Graphs.
J. Bioinform. Comput. Biol.
Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Shirlean Goodwin, Sridevi Bodreddigari, Thomas R. Sutter
2009 J jnl
Motif Tool Manager: a web-based platform for motif discovery.
BMC Bioinform.
Vinhthuy Phan
2009 J jnl
Optimal DNA Codes for Computing and Self-Assembly.
Int. J. Nanotechnol. Mol. Comput.
Max H. Garzon, Vinhthuy Phan, Andrew Neel
2008 J jnl
BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data.
Int. J. Comput. Biol. Drug Des.
Vinhthuy Phan, Kriangsiri Malasri
2008 J jnl
Motif Tool Manager: a web-based framework for motif discovery.
Bioinform.
Vinhthuy Phan, Nicholas A. Furlotte
2008 — conf
Synthetic Gene Design with a Large Number of Hidden Stop Codons.
BIBM
Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong
2008 — conf
Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies.
BIOCOMP
Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Thomas R. Sutter