Vincent Mallet

18 papers A* 2Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Comprehensive Benchmark for RNA 3D Structure-Function Modeling.
CoRR
Luis Wyss, Vincent Mallet, Wissam Karroucha, Karsten M. Borgwardt, Carlos G. Oliver
2025 — conf
AI-Driven Identification of Subclinical Alcohol Use Disorder in Type 2 Diabetes Patients.
AIME (2)
Melissa Larbi, Edouard Audit, Joël Chavas, Simplice Donfack, Vincent Mallet
2025 A* conf
AtomSurf: Surface Representation for Learning on Protein Structures.
ICLR
Vincent Mallet, Yangyang Miao, Souhaib Attaiki, Bruno Correia, Maks Ovsjanikov
2025 J jnl
Finding antibodies in cryo-EM maps with <tt>CrAI</tt>.
Bioinform.
Vincent Mallet, Chiara Rapisarda, Hervé Minoux, Maks Ovsjanikov
2024 J jnl
3D-based RNA function prediction tools in rnaglib.
CoRR
Carlos G. Oliver, Vincent Mallet, Jérôme Waldispühl
2024 J jnl
AlignScape, displaying sequence similarity using self-organizing maps.
Frontiers Bioinform.
Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier, Riccardo Pellarin
2023 J jnl
AtomSurf : Surface Representation for Learning on Protein Structures.
CoRR
Vincent Mallet, Souhaib Attaiki, Maks Ovsjanikov
2022 J jnl
Approximate Network Motif Mining Via Graph Learning.
CoRR
Carlos G. Oliver, Dexiong Chen, Vincent Mallet, Pericles Philippopoulos, Karsten M. Borgwardt
2022 — —
Geometric deep learning for structural bioinformatics. (Apprentissage profond géométrique pour la bioinformatique structurale).
Vincent Mallet
2022 J jnl
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions.
Bioinform.
Vincent Mallet, Luis Checa Ruano, Alexandra Moine-Franel, Michael Nilges, Karen Druart, Guillaume Bouvier, Olivier Sperandio
2022 J jnl
RNAglib: a python package for RNA 2.5 D graphs.
Bioinform.
Vincent Mallet, Carlos G. Oliver, Jonathan Broadbent, William L. Hamilton, Jérôme Waldispühl
2022 J jnl
Vernal: a tool for mining fuzzy network motifs in RNA.
Bioinform.
Carlos G. Oliver, Vincent Mallet, Pericles Philippopoulos, William L. Hamilton, Jérôme Waldispühl
2021 J jnl
Edge-similarity-aware Graph Neural Networks.
CoRR
Vincent Mallet, Carlos G. Oliver, William L. Hamilton
2021 A* conf
Reverse-Complement Equivariant Networks for DNA Sequences.
NeurIPS
Vincent Mallet, Jean-Philippe Vert
2021 J jnl
quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories.
Bioinform.
Vincent Mallet, Michael Nilges, Guillaume Bouvier
2020 J jnl
OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery.
J. Chem. Inf. Model.
Jacques Boitreaud, Vincent Mallet, Carlos G. Oliver, Jérôme Waldispühl
2020 J jnl
VeRNAl: A Tool for Mining Fuzzy Network Motifs in RNA.
CoRR
Carlos G. Oliver, Vincent Mallet, Pericles Philippopoulos, William L. Hamilton, Jérôme Waldispühl
2019 J jnl
Leveraging binding-site structure for drug discovery with point-cloud methods.
CoRR
Vincent Mallet, Carlos G. Oliver, Nicolas Moitessier, Jérôme Waldispühl