Vincent Lacroix

26 papers B 1C 10Journal 13
YearRankTypeTitle / Venue / Authors
2023 — book
De novo analysis of splicing from RNA-seq data: models, algorithms and applications.
Vincent Lacroix
2018 C conf
Modelling Dynamic Data Structures with the B Method.
ABZ
Frédéric Badeau, Vincent Lacroix, Vincent Monfort, Laurent Voisin, Christophe Métayer
2017 J jnl
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
Algorithms Mol. Biol.
Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2015 J jnl
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs.
Algorithms Mol. Biol.
Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot
2014 C conf
Navigating in a Sea of Repeats in RNA-seq without Drowning.
WABI
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2014 J jnl
Navigating in a sea of repeats in RNA-seq without drowning.
CoRR
Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix
2014 J jnl
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Bioinform.
Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot
2013 C conf
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data.
WABI
Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot
2013 J jnl
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data.
CoRR
Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot
2013 J jnl
ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
Nucleic Acids Res.
Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark F. Rogers, Kristina Ibáñez, Cesar Boullosa, Eduardo Andrés León, Asa Ben-Hur, Alfonso Valencia
2013 B conf
Telling Stories Fast.
SEA
Michele Borassi, Pierluigi Crescenzi, Vincent Lacroix, Andrea Marino, Marie-France Sagot, Paulo Vieira Milreu
2012 C conf
Efficient Bubble Enumeration in Directed Graphs.
SPIRE
Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot
2012 J jnl
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
BMC Bioinform.
Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix
2012 C conf
Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone.
ISCO
Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot
2012 J jnl
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.
Theor. Comput. Sci.
Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie
2010 C conf
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.
WABI
Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix
2010 C conf
Identifying SNPs without a Reference Genome by Comparing Raw Reads.
SPIRE
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix
2009 J jnl
Assessing the Exceptionality of Coloured Motifs in Networks.
EURASIP J. Bioinform. Syst. Biol.
Sophie Schbath, Vincent Lacroix, Marie-France Sagot
2009 J jnl
Modes and cuts in metabolic networks: Complexity and algorithms.
Biosyst.
Vicente Acuña, Flavio Chierichetti, Vincent Lacroix, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie
2008 J jnl
An Introduction to Metabolic Networks and Their Structural Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform.
Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot
2008 C conf
Exact Transcriptome Reconstruction from Short Sequence Reads.
WABI
Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron
2007 — —
Identification de motifs dans les réseaux métaboliques. (Motif identification in metabolic networks).
Vincent Lacroix
2007 J jnl
Metabolic network visualization eliminating node redundance and preserving metabolic pathways.
BMC Syst. Biol.
Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan
2006 C conf
Metabolic network visualization using constraint planar graph drawing algorithm.
IV
Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan
2006 J jnl
Motif Search in Graphs: Application to Metabolic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot
2005 C conf
Reaction Motifs in Metabolic Networks.
WABI
Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot