Vincent Gardeux

18 papers B 1C 1Misc 1Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format.
CoRR
Rahi Navelkar, Andrea Cosolo, Bogdan Bintu, Yubao Cheng, Vincent Gardeux, Silvia Gutnik, Taihei Fujimori, Antonina Hafner, Atishay Jay, Bojing Blair Jia, Adam Paul Jussila, Gerard Llimos, Antonios Lioutas, Nuno MC Martins, William J. Moore, Yodai Takei, Frances Wong, Kaifu Yang, Huaiying Zhang, Quan Zhu, Magda Bienko, Lacramioara Bintu, Long Cai, Bart Deplancke, Marcelo Nollmann, Susan E. Mango, Bing Ren, Peter J. Park, Ahilya N. Sawh, Andrew Schroeder, Jason R. Swedlow, Golnaz Vahedi, Chao-Ting Wu, Sarah Aufmkolk, Alistair N. Boettiger, Irene Farabella, Caterina Strambio-De-Castillia, Siyuan Wang
2020 J jnl
ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses.
Nucleic Acids Res.
Fabrice P. A. David, Maria Litovchenko, Bart Deplancke, Vincent Gardeux
2017 J jnl
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations.
J. Am. Medical Informatics Assoc.
Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier
2017 J jnl
ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.
Bioinform.
Vincent Gardeux, Fabrice P. A. David, Adrian Shajkofci, Petra C. Schwalie, Bart Deplancke
2017 J jnl
Adaptive pattern search for large-scale optimization.
Appl. Intell.
Vincent Gardeux, Mahamed G. H. Omran, Rachid Chelouah, Patrick Siarry, Fred W. Glover
2017 J jnl
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects.
J. Biomed. Informatics
Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier
2015 J jnl
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival.
Bioinform.
A. Grant Schissler, Vincent Gardeux, Qike Li, Ikbel Achour, Haiquan Li, Walter W. Piegorsch, Yves A. Lussier
2015 J jnl
Towards a PBMC "virogram assay" for precision medicine: Concordance between ex vivo and in vivo viral infection transcriptomes.
J. Biomed. Informatics
Vincent Gardeux, Anthony Bosco, Jianrong Li, Marilyn J. Halonen, Daniel Jackson, Fernando D. Martinez, Yves A. Lussier
2015 J jnl
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs.
J. Biomed. Informatics
Haiquan Li, Nima Pouladi, Ikbel Achour, Vincent Gardeux, Jianrong Li, Qike Li, Hao Helen Zhang, Fernando D. Martinez, Joe G. N. 'Skip' Garcia, Yves A. Lussier
2014 J jnl
'N-of-1-
J. Am. Medical Informatics Assoc.
Vincent Gardeux, Ikbel Achour, Jianrong Li, Mark Maienschein-Cline, Haiquan Li, Lorenzo L. Pesce, Gurunadh Parinandi, Neil Bahroos, Robert Winn, Ian T. Foster, Joe G. N. Garcia, Yves A. Lussier
2014 J jnl
ARTS: automated randomization of multiple traits for study design.
Bioinform.
Mark Maienschein-Cline, Zhengdeng Lei, Vincent Gardeux, Taimur Abbasi, Roberto F. Machado, Victor Gordeuk, Ankit A. Desai, Santosh Saraf, Neil Bahroos, Yves A. Lussier
2014 Misc conf
COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling.
AMIA
Young Ji Lee, Andrew D. Boyd, Jianrong Li, Vincent Gardeux, Colleen Kenost, Donald Saner, Haiquan Li, Ivo L. Abraham, Jerry A. Krishnan, Yves A. Lussier
2013 B conf
GA-KDE-Bayes: an evolutionary wrapper method based on non-parametric density estimation applied to bioinformatics problems.
ESANN
Maria Fernanda B. Wanderley, Vincent Gardeux, René Natowicz, Antônio de Pádua Braga
2013 J jnl
Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools.
J. Am. Medical Informatics Assoc.
Andrew D. Boyd, Jianrong John Li, Mike D. Burton, Michael Jonen, Vincent Gardeux, Ikbel Achour, Roger Q. Luo, Ilir Zenku, Neil Bahroos, Stephen B. Brown, Terry L. Vanden Hoek, Yves A. Lussier
2012 J jnl
From Swarm Art Toward Ecosystem Art.
Int. J. Swarm Intell. Res.
Stefan Bornhofen, Vincent Gardeux, Andréa Machizaud
2011 — —
Conception d'heuristiques d'optimisation pour les problèmes de grande dimension : application à l'analyse de données de puces à ADN. (Heuristics implementation for high-dimensional problem optimization : application in microarray data analysis).
Vincent Gardeux
2011 J jnl
EM323: a line search based algorithm for solving high-dimensional continuous non-linear optimization problems.
Soft Comput.
Vincent Gardeux, Rachid Chelouah, Patrick Siarry, Fred W. Glover
2009 C conf
Unidimensional Search for Solving Continuous High-Dimensional Optimization Problems.
ISDA
Vincent Gardeux, Rachid Chelouah, Patrick Siarry, Fred W. Glover