Vincent Berry

42 papers A* 1A 2B 5C 2Misc 2Journal 20Unranked 7
YearRankTypeTitle / Venue / Authors
2024 A conf
Is it Worth Migrating a Monolith to Microservices? An Experience Report on Performance, Availability and Energy Usage.
ICWS
Vincent Berry, Arnaud Castelltort, Benoit Lange, Joan Teriihoania, Chouki Tibermacine, Catia Trubiani
2022 — conf
Leveraging Community Software in CS Education to Avoid Reinventing the Wheel.
ITiCSE (2)
Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell
2022 — conf
ShellOnYou: Learning by Doing Unix Command Line.
ITiCSE (1)
Vincent Berry, Arnaud Castelltort, Chrysta Pelissier, Marion Rousseau, Chouki Tibermacine
2022 — conf
Stop Reinventing the Wheel! Promoting Community Software in Computing Education.
ITiCSE-WGR
Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell
2021 J jnl
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.
PLoS Comput. Biol.
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
2020 B conf
Scanning Phylogenetic Networks Is NP-hard.
SOFSEM
Vincent Berry, Céline Scornavacca, Mathias Weller
2018 J jnl
RecPhyloXML: a format for reconciled gene trees.
Bioinform.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
2016 — ch.
Maximum Compatible Tree.
Encyclopedia of Algorithms
Vincent Berry
2016 J jnl
SylvX: a viewer for phylogenetic tree reconciliations.
Bioinform.
François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry
2013 J jnl
Reconciliation and local gene tree rearrangement can be of mutual profit.
Algorithms Mol. Biol.
Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry
2013 J jnl
Representing a Set of Reconciliations in a Compact Way.
J. Bioinform. Comput. Biol.
Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez
2012 C conf
Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference.
WABI
Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry
2012 J jnl
Quartets and Unrooted phylogenetic Networks.
J. Bioinform. Comput. Biol.
Philippe Gambette, Vincent Berry, Christophe Paul
2011 J jnl
Building species trees from larger parts of phylogenomic databases.
Inf. Comput.
Céline Scornavacca, Vincent Berry, Vincent Ranwez
2011 J jnl
Models, algorithms and programs for phylogeny reconciliation.
Briefings Bioinform.
Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry
2010 — conf
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers.
RECOMB-CG
Jean-Philippe Doyon, Céline Scornavacca, Konstantin Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry
2010 J jnl
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sylvain Guillemot, Vincent Berry
2010 J jnl
ScripTree: scripting phylogenetic graphics.
Bioinform.
François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry
2009 J jnl
Computing galled networks from real data.
Bioinform.
Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul
2009 C conf
From Gene Trees to Species Trees through a Supertree Approach.
LATA
Céline Scornavacca, Vincent Berry, Vincent Ranwez
2009 J jnl
Linear time 3-approximation for the MAST problem.
ACM Trans. Algorithms
Vincent Berry, Christophe Paul, Sylvain Guillemot, François Nicolas
2009 J jnl
On the approximability of the Maximum Agreement SubTree and Maximum Compatible Tree problems.
Discret. Appl. Math.
Sylvain Guillemot, François Nicolas, Vincent Berry, Christophe Paul
2009 B conf
The Structure of Level-k Phylogenetic Networks.
CPM
Philippe Gambette, Vincent Berry, Christophe Paul
2008 J jnl
From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time.
Algorithmica
Vincent Berry, Zeshan Peng, H. F. Ting
2008 — ch.
Maximum Compatible Tree.
Encyclopedia of Algorithms
Vincent Berry
2008 — book
On building and comparing trees Application to supertrees in phylogenetics.
Vincent Berry
2008 J jnl
PhySIC_IST: cleaning source trees to infer more informative supertrees.
BMC Bioinform.
Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez
2007 J jnl
Developing new formulations and relaxations of single stage capacitated warehouse location problem (SSCWLP): Empirical investigation for assessing relative strengths and computational effort.
Eur. J. Oper. Res.
R. R. K. Sharma, Vincent Berry
2007 B conf
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem.
CPM
Sylvain Guillemot, Vincent Berry
2007 J jnl
Maximum agreement and compatible supertrees.
J. Discrete Algorithms
Vincent Berry, François Nicolas
2006 J jnl
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Vincent Berry, François Nicolas
2005 Misc conf
On the Approximation of Computing Evolutionary Trees.
COCOON
Vincent Berry, Sylvain Guillemot, François Nicolas, Christophe Paul
2004 B conf
Maximum Agreement and Compatible Supertrees (Extended Abstract).
CPM
Vincent Berry, François Nicolas
2001 J jnl
A Structured Family of Clustering and Tree Construction Methods.
Adv. Appl. Math.
David Bryant, Vincent Berry
2000 A* conf
A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract).
SODA
Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang
2000 J jnl
Inferring evolutionary trees with strong combinatorial evidence.
Theor. Comput. Sci.
Vincent Berry, Olivier Gascuel
1999 B conf
Faster reliable phylogenetic analysis.
RECOMB
Vincent Berry, David Bryant
1999 A conf
Quartet Cleaning: Improved Algorithms and Simulations.
ESA
Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham
1997 Misc conf
Inferring Evolutionary Trees with Strong Combinatorial Evidence.
COCOON
Vincent Berry, Olivier Gascuel
1995 — conf
Évaluation répartie asynchrone de (certaines) requêtes DATALOG.
JFPLC
Vincent Berry, Philippe Ézéquel
1994 — conf
Distinguer les variables distinguées.
JFPLC
Vincent Berry, Philippe Ézéquel
1993 — conf
Generating Goals and Their Use In Recursive Query Processing.
ILPS
Vincent Berry, Philippe Ézéquel