Vinay Varadan

25 papers A* 1Journal 9Unranked 15
YearRankTypeTitle / Venue / Authors
2022 J jnl
SYSMut: decoding the functional significance of rare somatic mutations in cancer.
Briefings Bioinform.
Sirvan Khalighi, Peronne Joseph, Deepak Babu, Salendra Singh, Thomas LaFramboise, Kishore Guda, Vinay Varadan
2020 J jnl
Deep learning-based prediction of response to HER2-targeted neoadjuvant chemotherapy from pre-treatment dynamic breast MRI: A multi-institutional validation study.
CoRR
Nathaniel Braman, Mohammed El Adoui, Manasa Vulchi, Paulette Turk, Maryam Etesami, Pingfu Fu, Kaustav Bera, Stylianos Drisis, Vinay Varadan, Donna Plecha, Mohammed Benjelloun, Jame Abraham, Anant Madabhushi
2019 — conf
Radiogenomic characterization of response to chemo-radiation therapy in glioblastoma is associated with PI3K/AKT/mTOR and apoptosis signaling pathways.
Computer-Aided Diagnosis
Niha G. Beig, Prateek Prasanna, Virginia B. Hill, Ruchika Verma, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari
2017 — conf
Radiogenomic analysis of hypoxia pathway reveals computerized MRI descriptors predictive of overall survival in glioblastoma.
Computer-Aided Diagnosis
Niha G. Beig, Jay Patel, Prateek Prasanna, Sasan Partovi, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari
2015 — conf
Identifying gene subnetworks associated with clinical outcome in ovarian cancer using Network Based Coalition Game.
EMBC
Abolfazl Razi, Fatemeh Afghah, Vinay Varadan
2015 — conf
Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations.
EMBC
Abolfazl Razi, Nilanjana Banerjee, Nevenka Dimitrova, Vinay Varadan
2013 — conf
Identification and characterization of gene fusions in breast cancer - A non-trivial pursuit.
GlobalSIP
Vinay Varadan, Vartika Agrawal, Lyndsay N. Harris, Nevenka Dimitrova
2012 — conf
Statistical assessment of gene fusion detection algorithms using RNA Sequencing Data.
SSP
Vinay Varadan, Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova, Lyndsay N. Harris
2012 J jnl
The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches.
IEEE Signal Process. Mag.
Vinay Varadan, Prateek Mittal, Charles J. Vaske, Stephen C. Benz
2011 — conf
A method for finding novel associations between genome-wide copy number and dna methylation patterns.
GENSiPS
Man-Hung Eric Tang, Vinay Varadan, Sid Kamalakaran, Michael Q. Zhang, Nevenka Dimitrova, James Hicks
2011 — conf
Comparative copy number variation from whole genome sequencing.
GENSiPS
Angel Janevski, Vinay Varadan, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova
2010 — conf
Pathway and network analysis probing epigenetic influences on chemosensitivity in ovarian cancer.
GENSiPS
Nilanjana Banerjee, Angel Janevski, Sitharthan Kamalakaran, Vinay Varadan, Robert Lucito, Nevenka Dimitrova
2009 J jnl
PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment.
BMC Bioinform.
Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Vinay Varadan, Nevenka Dimitrova
2009 — conf
Tools for High Throughput Differential Methylation Study in Cancer.
ICT Innovations
Nevenka Dimitrova, Sitharthan Kamalakaran, Angel Janevski, Nilanjana Banerjee, Vinay Varadan, Robert Lucito, James Hicks
2009 — conf
Towards identification of thematic overlaps in gene sets.
GENSiPS
Nilanjana Banerjee, Vinay Varadan, Sitharthan Kamalakaran, Angel Janevski
2006 — conf
Computational inference of the molecular logic for synaptic connectivity in
ISMB (Supplement of Bioinformatics)
Vinay Varadan, David M. Miller III, Dimitris Anastassiou
2006 J jnl
Dynamical model reconstruction and accurate prediction of power-pool time series.
IEEE Trans. Instrum. Meas.
Vinay Varadan, Henry Leung, Éloi Bossé
2006 J jnl
Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis.
PLoS Comput. Biol.
Vinay Varadan, Dimitris Anastassiou
2005 A* conf
Unsupervised evidence integration.
ICML
Philip M. Long, Vinay Varadan, Sarah Gilman, Mark Treshock, Rocco A. Servedio
2003 J jnl
Classification of audio radar signals using radial basis function neural networks.
IEEE Trans. Instrum. Meas.
Trent McConaghy, Henry Leung, Éloi Bossé, Vinay Varadan
2002 — conf
Chaotic system reconstruction from noisy time series measurements using improved least squares genetic programming.
ISCAS (3)
Vinay Varadan, Henry Leung
2002 — conf
System Modeling and Design using Genetic Programming.
IEEE ICCI
Henry Leung, Vinay Varadan
2001 — conf
Design of piece-wise maps for spread spectrum communication using genetic programming.
ISCAS (3)
Vinay Varadan, Henry Leung
2001 J jnl
Reconstruction of polynomial systems from noisy time-series measurements using genetic programming.
IEEE Trans. Ind. Electron.
Vinay Varadan, Henry Leung
2001 J jnl
Secure communication using a chaos based signal encryption scheme.
IEEE Trans. Consumer Electron.
Krishnamurthy Murali, Haiyang Yu, Vinay Varadan, Henry Leung