Ville Mustonen

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2024 J jnl
Quantifying massively parallel microbial growth with spatially mediated interactions.
PLoS Comput. Biol.
Florian Borse, Dovydas Kiciatovas, Teemu Kuosmanen, Mabel Vidal, Guillermo Cabrera-Vives, Johannes Cairns, Jonas Warringer, Ville Mustonen
2023 J jnl
Time-travelling pathogens and their risk to ecological communities.
PLoS Comput. Biol.
Giovanni Strona, Corey J. A. Bradshaw, Pedro Cardoso, Nicholas Gotelli, Frédéric Guillaume, Federica Manca, Ville Mustonen, Luis Zaman
2022 J jnl
Identification of multiplicatively acting modulatory mutational signatures in cancer.
BMC Bioinform.
Dovydas Kiciatovas, Qingli Guo, Miika Kailas, Henri Pesonen, Jukka Corander, Samuel Kaski, Esa Pitkänen, Ville Mustonen
2021 J jnl
Drug-induced resistance evolution necessitates less aggressive treatment.
PLoS Comput. Biol.
Teemu Kuosmanen, Johannes Cairns, Robert Noble, Niko Beerenwinkel, Tommi Mononen, Ville Mustonen
2020 J jnl
Multiobjective optimization identifies cancer-selective combination therapies.
PLoS Comput. Biol.
Otto Pulkkinen, Prson Gautam, Ville Mustonen, Tero Aittokallio
2020 J jnl
The evolutionary history of 2,658 cancers.
Nat.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
2019 J jnl
Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression.
PLoS Comput. Biol.
Jani V. Anttila, Mikhail Shubin, Johannes Cairns, Florian Borse, Qingli Guo, Tommi Mononen, Ignacio Vázquez-García, Otto Pulkkinen, Ville Mustonen
2018 J jnl
Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data.
PLoS Comput. Biol.
Danesh Moradigaravand, Martin Palm, Anne Farewell, Ville Mustonen, Jonas Warringer, Leopold Parts
2014 J jnl
Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data.
PLoS Comput. Biol.
Christopher J. R. Illingworth, Andrej Fischer, Ville Mustonen
2012 J jnl
A method to infer positive selection from marker dynamics in an asexual population.
Bioinform.
Christopher J. R. Illingworth, Ville Mustonen
2012 J jnl
GraphAlignment: Bayesian pairwise alignment of biological networks.
BMC Syst. Biol.
Michal Kolár, Jörn Meier, Ville Mustonen, Michael Lässig, Johannes Berg