Vijay Rajagopal

17 papers B 1Journal 7Unranked 9
YearRankTypeTitle / Venue / Authors
2023 J jnl
Bioinform.
Joshua Forrest, Vijay Rajagopal, Michael P. H. Stumpf, Michael Pan
2022 J jnl
PLoS Comput. Biol.
Qilin Yu, Taeyoon Kim, Vijay Rajagopal
2021 J jnl
Comput. Biol. Medicine
Diana C. de Oliveira, Daniel M. Espino, Luca Deorsola, Jonathan P. Mynard, Vijay Rajagopal, Keith Buchan, Dana Dawson, Duncan E. T. Shepherd
2021 J jnl
Bioinform.
Afshin Khadangi, Thomas Boudier, Vijay Rajagopal
2020 B conf
ICPR
Afshin Khadangi, Thomas Boudier, Vijay Rajagopal
2019 J jnl
BMC Medical Informatics Decis. Mak.
Afshin Khadangi, Eric Hanssen, Vijay Rajagopal
2018 conf
BIBM
Afshin Khadangi, Eric Hanssen, Vijay Rajagopal
2018 J jnl
PLoS Comput. Biol.
Shouryadipta Ghosh, Kenneth Tran, Lea M. D. Delbridge, Anthony Hickey, Eric Hanssen, Edmund J. Crampin, Vijay Rajagopal
2017 conf
EMBC
Shouryadipta Ghosh, Edmund J. Crampin, Eric Hanssen, Vijay Rajagopal
2015 J jnl
PLoS Comput. Biol.
Vijay Rajagopal, Gregory Bass, Cameron G. Walker, David J. Crossman, Amorita Petzer, Anthony Hickey, Ivo Siekmann, Masahiko Hoshijima, Mark H. Ellisman, Edmund J. Crampin, Christian Soeller
2010 conf
Digital Mammography / IWDM
Angela W. C. Lee, Julia A. Schnabel, Vijay Rajagopal, Poul M. F. Nielsen, Martyn P. Nash
2008 conf
Image-Guided Procedures
Angela W. C. Lee, Vijay Rajagopal, Jae-Hoon Chung, Peter Bier, Poul M. F. Nielsen, Martyn P. Nash
2008 conf
MICCAI (2)
Jae-Hoon Chung, Vijay Rajagopal, Poul M. F. Nielsen, Martyn P. Nash
2008 conf
Digital Mammography / IWDM
Vijay Rajagopal, Martyn P. Nash, Ralph Highnam, Poul M. F. Nielsen
2007 conf
MICCAI (1)
Vijay Rajagopal, Angela W. C. Lee, Jae-Hoon Chung, Ruth Warren, Ralph Highnam, Poul M. F. Nielsen, Martyn P. Nash
2006 conf
EMBC
Vijay Rajagopal, Jae-Hoon Chung, Poul M. F. Nielsen, Martyn P. Nash
2004 conf
MICCAI (2)
Pras Pathmanathan, David Gavaghan, Jonathan P. Whiteley, Michael Brady, Martyn P. Nash, Poul M. F. Nielsen, Vijay Rajagopal
redb/extractors/pe_extractors/pe_inconsistency_tests.py
← Index redb/extractors/pe_extractors/pe_inconsistency_tests.py python
import inspect
from redb.ext.spoof_check import (
    Result,
    checksum_test,
    duplicate_test,
    import_count_test,
    linker_test,
)
from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import (
    DotNetInconsistencyTests,
    PEInconsistencyTests,
)
from datetime import datetime, timezone
from typing import Any


class PEInconstistencyTestsExtractor(PEExtractor):
    """Collection of functions to perform features inconsistency tests

    A Test where the result is True means that there is an inconsistency.
    At the moments it runs a series of inconsistency tests on PE metadata from
    - spoof_check
    - pescanner
    - dotnetfile
    """

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
        dotnet=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.dotnet = dotnet if dotnet else None
        self.pe_inconsistency_tests = None
        self.dotnet_inconsistency_tests = None
        self.elastic_index = self.index_prefix + "-pe_inconsistency_tests"

    def tag(self):
        return [Tag.PE_INCONSISTENCY_TESTS.value, Tag.DOTNET_INCONSISTENCY_TESTS.value]

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        tests_performed = False

        # Handle PE rich header tests
        try:
            rich_header = self.pe.parse_rich_header()
            if rich_header:
                self.pe_inconsistency_tests = PEInconsistencyTests(
                    test_rich_header_checksum=checksum_test(self.pe, rich_header) == Result.INVALID,
                    test_rich_header_duplicate=duplicate_test(self.pe, rich_header) == Result.INVALID,
                    test_rich_header_linker=linker_test(self.pe, rich_header) == Result.INVALID,
                    test_rich_header_import_count=import_count_test(self.pe, rich_header) == Result.INVALID,
                )
                tests_performed = True
            else:
                self.pe_inconsistency_tests = PEInconsistencyTests(
                    test_rich_header_checksum=None,
                    test_rich_header_duplicate=None,
                    test_rich_header_linker=None,
                    test_rich_header_import_count=None,
                )
        except Exception as e:
            self.log.error(f"Error processing rich header tests for {self.hash.sha256}: {e}")
            self.pe_inconsistency_tests = None

            # self.export_to_elastic([self.pe_inconsistency_tests])

        # Handle .NET tests
        try:
            if self._check_dotnet():
                if not self.dotnet:
                    self.dotnet, self.error = self._generate_dotnetfile_object()
                if self.error:
                    self.log.error(f"Error generating .NET object {self.hash.sha256}: {self.error}")
                self.dotnet_inconsistency_tests = DotNetInconsistencyTests(
                    test_dotnet_data_dir_hidden=self.dotnet.AntiMetadataAnalysis.is_dotnet_data_directory_hidden,
                    test_dotnet_extra_data=self.dotnet.AntiMetadataAnalysis.has_metadata_table_extra_data,
                    test_dotnet_fake_types=self.dotnet.AntiMetadataAnalysis.has_self_referenced_typeref_entries,
                    test_dotnet_invalid_type_ref=self.dotnet.AntiMetadataAnalysis.has_invalid_typeref_entries,
                    test_dotnet_fake_datastreams=self.dotnet.AntiMetadataAnalysis.has_fake_data_streams,
                    test_dotnet_extra_module_table=self.dotnet.AntiMetadataAnalysis.module_table_has_multiple_rows,
                    test_dotnet_extra_assembly_table=self.dotnet.AntiMetadataAnalysis.assembly_table_has_multiple_rows,
                    test_dotnet_invalid_strings_stream=self.dotnet.AntiMetadataAnalysis.has_invalid_strings_stream_entries,
                    test_dotnet_streams_mixed_case=self.dotnet.AntiMetadataAnalysis.has_mixed_case_stream_names,
                    test_dotnet_method_def_invalid_table=self.dotnet.AntiMetadataAnalysis.has_invalid_methoddef_entries,
                    test_dotnet_max_len_exceeding_strings=self.dotnet.AntiMetadataAnalysis.has_max_len_exceeding_strings,
                )
                tests_performed = True
        except Exception as e:
            self.log.error(f"Error processing .NET tests for {self.hash.sha256}: {e}")
            self.dotnet_inconsistency_tests = None

        # self.export_to_elastic([self.dotnet_inconsistency_tests])

        # If no tests were performed, return False to skip database insertion
        if not tests_performed:
            self.log.info("No inconsistency tests were performed.")
            return False

        return True

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return [self.pe_inconsistency_tests, self.dotnet_inconsistency_tests]
        elif exporter_type == "ClickHouseExporter":
            current_time = datetime.now(timezone.utc)

            # For PE tests: if no rich header (all True), store NULL instead
            has_rich_header = any([
                hasattr(self.pe_inconsistency_tests, 'test_rich_header_checksum'),
                hasattr(self.pe_inconsistency_tests, 'test_rich_header_duplicate'),
                hasattr(self.pe_inconsistency_tests, 'test_rich_header_linker'),
                hasattr(self.pe_inconsistency_tests, 'test_rich_header_import_count')
            ])
            
            pe_tests = [
                None if not has_rich_header else self.pe_inconsistency_tests.test_rich_header_checksum,
                None if not has_rich_header else self.pe_inconsistency_tests.test_rich_header_duplicate,
                None if not has_rich_header else self.pe_inconsistency_tests.test_rich_header_linker,
                None if not has_rich_header else self.pe_inconsistency_tests.test_rich_header_import_count,
            ]
            
            # For .NET tests: if not a .NET file, store NULL instead of False
            dotnet_tests = [
                self.dotnet_inconsistency_tests.test_dotnet_data_dir_hidden if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_extra_data if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_fake_types if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_invalid_type_ref if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_fake_datastreams if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_extra_module_table if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_extra_assembly_table if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_invalid_strings_stream if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_streams_mixed_case if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_method_def_invalid_table if self.dotnet_inconsistency_tests else None,
                self.dotnet_inconsistency_tests.test_dotnet_max_len_exceeding_strings if self.dotnet_inconsistency_tests else None,
            ]
            
            data = [[
                self.sha256,
                self.md5,
                self.sha1,
                *pe_tests,
                *dotnet_tests,
                current_time
            ]]

            column_names = [
                'sha256', 'md5', 'sha1',
                'test_rich_header_checksum', 'test_rich_header_duplicate', 'test_rich_header_linker', 'test_rich_header_import_count',
                'test_dotnet_data_dir_hidden', 'test_dotnet_extra_data',
                'test_dotnet_fake_types', 'test_dotnet_invalid_type_ref',
                'test_dotnet_fake_datastreams', 'test_dotnet_extra_module_table',
                'test_dotnet_extra_assembly_table', 'test_dotnet_invalid_strings_stream',
                'test_dotnet_streams_mixed_case', 'test_dotnet_method_def_invalid_table',
                'test_dotnet_max_len_exceeding_strings', 'analysis_date'
            ]
            
            column_type_names = [
                'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)',
                'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)',
                'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)',
                'Nullable(Boolean)', 'Nullable(Boolean)', 'Nullable(Boolean)',
                'DateTime64(3, \'UTC\')'
            ]

            if not data:
                return None

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_pe_inconsistency_tests"