Vida Ravanmehr

25 papers B 3C 1Misc 2Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Nat. Comput. Sci.
Luca Cappelletti, Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Carlos Cano, Marcin P. Joachimiak, Christopher J. Mungall, Peter N. Robinson, Justin T. Reese, Giorgio Valentini
2023 J jnl
CoRR
J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina G. Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese
2023 J jnl
Bioinform.
J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina G. Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese
2021 J jnl
CoRR
Luca Cappelletti, Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Marcin P. Joachimiak, Christopher J. Mungall, Peter N. Robinson, Justin T. Reese, Giorgio Valentini
2021 J jnl
CoRR
Giorgio Valentini, Elena Casiraghi, Luca Cappelletti, Vida Ravanmehr, Tommaso Fontana, Justin T. Reese, Peter N. Robinson
2021 J jnl
Patterns
Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
2020 J jnl
Nucleic Acids Res.
Kent A. Shefchek, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu, Deepak R. Unni, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky, Xingmin Aaron Zhang, James P. Balhoff, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak, Simon Jupp, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington, Clare Pilgrim, Tim E. Putman, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia, James Seager, Erik Segerdell, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza, Sebastian Köhler, Damian Smedley, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel, Monica C. Munoz-Torres, David Osumi-Sutherland
2019 J jnl
npj Digit. Medicine
Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson
2018 J jnl
Bioinform.
Vida Ravanmehr, Minji Kim, Zhiying Wang, Olgica Milenkovic
2018 J jnl
Discret. Appl. Math.
Vida Ravanmehr, Gregory J. Puleo, Sadegh Bolouki, Olgica Milenkovic
2016 J jnl
CoRR
Vida Ravanmehr, Mehrdad Khatami, David Declercq, Bane Vasic
2016 J jnl
Trans. Emerg. Telecommun. Technol.
Vida Ravanmehr, Mehrdad Khatami, David Declercq, Bane Vasic
2016 J jnl
CoRR
Vida Ravanmehr, Sadegh Bolouki, Gregory J. Puleo, Olgica Milenkovic
2016 B conf
ITW
Vida Ravanmehr, Sadegh Bolouki, Gregory J. Puleo, Olgica Milenkovic
2015
Vida Ravanmehr
2015 Misc conf
ITA
Bane Vasic, Predrag Ivanis, Srdan Brkic, Vida Ravanmehr
2014 Misc conf
ITA
Vida Ravanmehr, David Declercq, Bane Vasic
2014 B conf
ISIT
Vida Ravanmehr, David Declercq, Bane Vasic
2014 B conf
ISIT
Mehrdad Khatami, Vida Ravanmehr, Bane Vasic
2012 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Bane Vasic, Vida Ravanmehr, Anantha Raman Krishnan
2012 J jnl
IEEE J. Emerg. Sel. Topics Circuits Syst.
Vida Ravanmehr, Ludovic Danjean, Bane Vasic, David Declercq
2012 C conf
CIBCB
Vida Ravanmehr, Bane Vasic
2012 conf
ISTC
Vida Ravanmehr, Ludovic Danjean, Bane Vasic, David Declercq
2011 conf
ISABEL
Vida Ravanmehr, Ludovic Danjean, David Declercq, Bane Vasic
2009 J jnl
Ars Comb.
Morteza Esmaeili, Vida Ravanmehr
redb/extractors/macho_extractor.py
← Index redb/extractors/macho_extractor.py python
import logging
from abc import ABCMeta, abstractmethod
import inspect
import sys
import os

import machofile

from redb.extractors.extractor import Extractor

logger = logging.getLogger(__name__)


@abstractmethod
class MachOExtractor(Extractor, metaclass=ABCMeta):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        macho=None,
    ):
        # Read binary and parse machofile BEFORE calling super().__init__
        # This avoids reading the file twice
        with open(filepath, "rb") as f:
            binary_data = f.read()

        # Parse machofile with binary data
        self.macho = macho if macho else self._generate_machofile_object(binary_data)

        # Extract hashes from machofile to pass to parent
        precomputed_hashes = None
        if self.macho:
            try:
                general_info = self.macho.get_general_info()
                if general_info:
                    # For FAT binaries, get_general_info() returns dict with 'fat' key
                    # For single-arch, it returns the info directly
                    if 'fat' in general_info:
                        fat_info = general_info['fat']
                        precomputed_hashes = {
                            'MD5': fat_info.get('MD5'),
                            'SHA1': fat_info.get('SHA1'),
                            'SHA256': fat_info.get('SHA256'),
                        }
                    else:
                        precomputed_hashes = {
                            'MD5': general_info.get('MD5'),
                            'SHA1': general_info.get('SHA1'),
                            'SHA256': general_info.get('SHA256'),
                        }
            except Exception as e:
                logger.debug(f"Could not get hashes from machofile: {e}")

        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            precomputed_hashes=precomputed_hashes,
        )

        # Store binary data so base class doesn't re-read
        self._binary_data = binary_data

    @property
    def binary(self):
        """Override to use already-read binary data."""
        return self._binary_data

    def _generate_machofile_object(self, binary_data):
        """Generate and parse a machofile object from binary data."""
        macho = None
        try:
            macho = machofile.UniversalMachO(data=binary_data)
            if not macho:
                raise Exception("Empty file?")

            # Parse the MachO object once during initialization
            macho.parse()

        except Exception as e:
            logger.error(f"Format error parsing MachO: {e}")
        return macho

    # def _is_macho_file(self):
    #     """Check if the file is a valid Mach-O binary."""
    #     try:
    #         if not self.macho:
    #             return False
            
    #         # For Universal/FAT binaries, check if any architecture is valid
    #         if hasattr(self.macho, 'is_fat') and self.macho.is_fat:
    #             return len(self.macho.architectures) > 0
    #         else:
    #             # Single architecture binary
    #             return hasattr(self.macho, 'macho') and self.macho.macho is not None
    #     except Exception as e:
    #         self.log.error(f"Error checking Mach-O file: {e}")
    #         return False

    def _is_signed(self):
        """Check if the Mach-O binary is code signed using new API."""
        try:
            if not self.macho:
                return False

            # Get architectures using new API
            architectures = self.macho.get_architectures()

            # For each architecture, check if signed
            for arch in architectures:
                try:
                    signature_info = self.macho.get_code_signature_info(arch=arch)
                    if signature_info and signature_info.get('signed', False):
                        return True
                except Exception:
                    continue

            return False
        except Exception as e:
            self.log.error(f"Error checking Mach-O signature: {e}")
            return False

    def _get_architectures(self):
        """Get list of architectures in the Mach-O binary using new API."""
        try:
            if not self.macho:
                return []

            # Use new API method
            architectures = self.macho.get_architectures()
            return architectures if architectures else []
        except Exception as e:
            self.log.error(f"Error getting architectures: {e}")
            return []

    # def _get_macho_for_arch(self, arch_name=None):
    #     """Get MachO instance for specific architecture or default."""
    #     try:
    #         if not self.macho:
    #             return None
            
    #         if hasattr(self.macho, 'is_fat') and self.macho.is_fat:
    #             if arch_name:
    #                 return self.macho.architectures.get(arch_name)
    #             else:
    #                 # Return first available architecture
    #                 return next(iter(self.macho.architectures.values())) if self.macho.architectures else None
    #         else:
    #             # Single architecture binary
    #             return self.macho.macho if hasattr(self.macho, 'macho') else None
    #     except Exception as e:
    #         self.log.error(f"Error getting MachO for architecture: {e}")
    #         return None

    # def _get_formatted_header_values(self, header):
    #     """Get both raw and human-readable header values."""
    #     try:
    #         macho_instance = self._get_macho_for_arch()
    #         if not macho_instance:
    #             return None
            
    #         # Parse the MachO if not already parsed
    #         if not hasattr(macho_instance, 'header') or not macho_instance.header:
    #             macho_instance.parse()
            
    #         # Get human-readable values using machofile's formatting methods
    #         magic_str = macho_instance.format_magic_value(header.get('magic', 0))
            
    #         # Simple CPU type mapping since CPU_TYPE_MAP is not exposed
    #         cputype = header.get('cputype', 0)
    #         if cputype == 0x7:
    #             cputype_str = "x86"
    #         elif cputype == 0x1000007:
    #             cputype_str = "x86_64"
    #         elif cputype == 0xC:
    #             cputype_str = "ARM"
    #         elif cputype == 0x100000C:
    #             cputype_str = "ARM 64-bit"
    #         else:
    #             cputype_str = str(cputype)
            
    #         cpusubtype_str = macho_instance.decode_cpusubtype(header.get('cputype', 0), header.get('cpusubtype', 0))
    #         filetype_str = macho_instance.format_file_type(header.get('filetype', 0))
    #         flags_str = macho_instance.decode_flags(header.get('flags', 0))
            
    #         return {
    #             'raw': {
    #                 'magic': header.get('magic', 0),
    #                 'cputype': header.get('cputype', 0),
    #                 'cpusubtype': header.get('cpusubtype', 0),
    #                 'filetype': header.get('filetype', 0),
    #                 'flags': header.get('flags', 0),
    #             },
    #             'formatted': {
    #                 'magic_str': magic_str,
    #                 'cputype_str': cputype_str,
    #                 'cpusubtype_str': cpusubtype_str,
    #                 'filetype_str': filetype_str,
    #                 'flags_str': flags_str,
    #             }
    #         }
    #     except Exception as e:
    #         self.log.error(f"Error formatting header values: {e}")
    #         return None