Victor M. Markowitz

61 papers A* 12A 8B 9C 3Journal 23Unranked 4

Year	Rank	Type	Title / Venue / Authors
2017	J	`jnl`	IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res. Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova
2017	J	`jnl`	IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides
2017	J	`jnl`	IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
2014	J	`jnl`	IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
2014	J	`jnl`	IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
2014	B	`conf`	Maintaining a microbial genome & metagenome data analysis system in an academic setting. SSDBM I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu
2013	B	`conf`	Accelerating gene context analysis using bitmaps. SSDBM Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis
2012	J	`jnl`	IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
2012	J	`jnl`	IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
2012	J	`jnl`	The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides
2010	J	`jnl`	The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides
2010	J	`jnl`	The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
2009	B	`conf`	A Statistical Framework for the Functional Analysis of Metagenomes. RECOMB Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter
2009	J	`jnl`	IMG ER: a system for microbial genome annotation expert review and curation. Bioinform. Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides
2008	C	`conf`	Annotation of metagenome short reads using proxygenes. ECCB Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz
2008	J	`jnl`	IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides
2008	J	`jnl`	The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
2007	J	`jnl`	Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinform. Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz
2006	—	`conf`	An Application Driven Perspective on Biological Data Integration. DILS Victor M. Markowitz
2006	—	`conf`	An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides
2006	J	`jnl`	The integrated microbial genomes (IMG) system. Nucleic Acids Res. Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
2005	A*	`conf`	The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides
2004	A*	`conf`	Biological Data Management: Research, Practice and Opportunities. VLDB Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers
2003	J	`jnl`	Data Management Challenges for Molecular and Cell Biology: An Industry Perspective. OMICS Victor M. Markowitz
2003	—	`ch.`	Integration Challenges in Gene Expression Data Management. Bioinformatics Victor M. Markowitz, John Campbell, I-Min A. Chen, Anthony Kosky, Krishna Palaniappan, Thodoros Topaloglou
2002	B	`conf`	Gene Expression Data Management: A Case Study. EDBT Victor M. Markowitz, I-Min A. Chen, Anthony Kosky
2001	C	`conf`	Applying Data Warehousing Concepts to Gene Expression Data Management. BIBE Victor M. Markowitz, Thodoros Topaloglou
1999	A	`conf`	Seamless Integration of Biological Applications within a Database Framework. ISMB Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz
1998	A	`conf`	Advanced Query Mechanisms for Biological Databases. ISMB I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou
1998	B	`conf`	Exploring Heterogeneous Biological Databases: Tools and Applications. EDBT Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto
1997	B	`conf`	Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. SSDBM I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
1997	A*	`conf`	Developing and Accessing Scientific Databases with the OPM Data Management Tools. ICDE I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
1997	B	`conf`	Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools SSDBM I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
1996	B	`conf`	Version Management for Scientific Databases. EDBT I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman
1995	J	`jnl`	An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Inf. Syst. I-Min A. Chen, Victor M. Markowitz
1995	J	`jnl`	Characterizing Heterogeneous Molecular Biology Database Systems. J. Comput. Biol. Victor M. Markowitz, Otto Ritter
1995	J	`jnl`	Heterogeneous Molecular Biology Databases. J. Comput. Biol. Victor M. Markowitz
1995	A*	`conf`	Modeling Scientific Experiments with an Object Data Model. ICDE I-Min A. Chen, Victor M. Markowitz
1994	A	`conf`	An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools. ER Victor M. Markowitz, Arie Shoshani
1994	J	`jnl`	Safe referential integrity and null constraint structures in relational databases. Inf. Syst. Victor M. Markowitz
1993	C	`conf`	Data Management Tools for Genomic Applications: A Progress Report. DEXA Victor M. Markowitz, I-Min A. Chen
1993	A*	`conf`	Object Queries over Relational Databases: Language, Implementation, and Applications. ICDE Victor M. Markowitz, Arie Shoshani
1992	A*	`conf`	A Relation Merging Technique for Relational Databases. ICDE Victor M. Markowitz
1992	B	`conf`	Data Management for Genomic Mapping Applications: A Case Study. SSDBM Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn
1992	J	`jnl`	Representing Extended Entity-Relationship Structures in Relational Databases: A Modular Approach. ACM Trans. Database Syst. Victor M. Markowitz, Arie Shoshani
1991	—	`conf`	An Architecture for Identifying Objects in Multidatabases. RIDE-IMS Victor M. Markowitz
1991	A*	`conf`	Problems Underlying the Use of Referential Integrity in Relational Database Management Systems. ICDE Victor M. Markowitz
1991	A*	`conf`	Safe Referential Integrity Structures in Relational Databases. VLDB Victor M. Markowitz
1990	J	`jnl`	Identifying Extended Entity-Relationship Object Structures in Relational Schemas. IEEE Trans. Software Eng. Victor M. Markowitz, Johann A. Makowsky
1990	A*	`conf`	Referential Integrity Revisited: An Object-Oriented Perspective. VLDB Victor M. Markowitz
1990	A*	`conf`	Representing Processes in the Extended Entity-Relationship Model. ICDE Victor M. Markowitz
1989	A	`conf`	Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases. ER Victor M. Markowitz, Arie Shoshani
1989	A	`conf`	Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas. ER Victor M. Markowitz, Arie Shoshani
1989	—	`conf`	On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model. SIGMOD Conference Victor M. Markowitz, Arie Shoshani
1988	A*	`conf`	Incremental Restructuring of Relational Schemas. ICDE Victor M. Markowitz, Johann A. Makowsky
1987	—	`—`	Entity-Relationship consistency for the relational model of databases. Victor M. Markowitz
1987	A*	`conf`	Incremental Reorganization of Relational Databases. VLDB Victor M. Markowitz, Johann A. Makowsky
1986	A	`conf`	Entity-Relationship Consistency for Relational Schemas. ICDT Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics
1984	J	`jnl`	An entity-relationship algebra and its semantic description capabilities. J. Syst. Softw. Victor M. Markowitz, Yoav Raz
1983	A	`conf`	A Modified Relational Algebra and its Use in an Entity-Relationship Environment. ER Victor M. Markowitz, Yoav Raz
1983	A	`conf`	ERROL: An Entity-Relationship, Role Oriented, Query Language. ER Victor M. Markowitz, Yoav Raz