Victor Greiff

26 papers A* 2Journal 24
YearRankTypeTitle / Venue / Authors
2026 J jnl
TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.
PLoS Comput. Biol.
Koshlan Mayer-Blackwell, Anastasia A. Minervina, Mikhail Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters, Emily S. Ford, Amanda Posgai, Kasi Vegesana, Samuel Minot, David M. Koelle, Victor Greiff, Philip Bradley, Todd M. Brusko, Paul G. Thomas, Andrew Fiore-Gartland
2025 J jnl
Attribution assignment for deep-generative sequence models enables interpretability analysis using positive-only data.
CoRR
Robert Frank, Michael Widrich, Rahmad Akbar, Günter Klambauer, Geir Kjetil Sandve, Philippe A. Robert, Victor Greiff
2024 J jnl
Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics.
Nat. Mac. Intell.
Milena Pavlovic, Ghadi S. Al Hajj, Chakravarthi Kanduri, Johan Pensar, Mollie Wood, Ludvig Magne Sollid, Victor Greiff, Geir Kjetil Sandve
2024 A* conf
Incorporating probabilistic domain knowledge into deep multiple instance learning.
ICML
Ghadi S. Al Hajj, Aliaksandr Hubin, Chakravarthi Kanduri, Milena Pavlovic, Knut Dagestad Rand, Michael Widrich, Anne H. Schistad Solberg, Victor Greiff, Johan Pensar, Günter Klambauer, Geir Kjetil Sandve
2024 J jnl
Linguistics-based formalization of the antibody language as a basis for antibody language models.
Nat. Comput. Sci.
Mai Ha Vu, Philippe A. Robert, Rahmad Akbar, Bartlomiej Swiatczak, Geir Kjetil Sandve, Dag Trygve Truslew Haug, Victor Greiff
2024 J jnl
Predictability of antigen binding based on short motifs in the antibody CDRH3.
Briefings Bioinform.
Lonneke Scheffer, Eric Emanuel Reber, Brij Bhushan Mehta, Milena Pavlovic, Maria Chernigovskaya, Eve Richardson, Rahmad Akbar, Fridtjof Lund-Johansen, Victor Greiff, Ingrid Hobæk Haff, Geir Kjetil Sandve
2023 J jnl
Best practices for machine learning in antibody discovery and development.
CoRR
Leonard Wossnig, Norbert Furtmann, Andrew Buchanan, Sandeep Kumar, Victor Greiff
2023 J jnl
Bridging the neutralization gap for unseen antibodies.
Nat. Mac. Intell.
Philippe A. Robert, Victor Greiff
2023 J jnl
Linguistically inspired roadmap for building biologically reliable protein language models.
Nat. Mac. Intell.
Mai Ha Vu, Rahmad Akbar, Philippe A. Robert, Bartlomiej Swiatczak, Geir Kjetil Sandve, Victor Greiff, Dag Trygve Truslew Haug
2022 J jnl
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking.
Bioinform.
Geir Kjetil Sandve, Victor Greiff
2022 J jnl
Advancing protein language models with linguistics: a roadmap for improved interpretability.
CoRR
Mai Ha Vu, Rahmad Akbar, Philippe A. Robert, Bartlomiej Swiatczak, Victor Greiff, Geir Kjetil Sandve, Dag Trygve Truslew Haug
2022 J jnl
AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisation.
CoRR
Mohammad Asif Khan, Alexander I. Cowen-Rivers, Derrick-Goh-Xin Deik, Antoine Grosnit, Kamil Dreczkowski, Philippe A. Robert, Victor Greiff, Rasul Tutunov, Dany Bou-Ammar, Jun Wang, Haitham Bou-Ammar
2022 J jnl
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.
Bioinform.
Torbjørn Rognes, Lonneke Scheffer, Victor Greiff, Geir Kjetil Sandve
2022 J jnl
ImmunoLingo: Linguistics-based formalization of the antibody language.
CoRR
Mai Ha Vu, Philippe A. Robert, Rahmad Akbar, Bartlomiej Swiatczak, Geir Kjetil Sandve, Dag Trygve Truslew Haug, Victor Greiff
2022 J jnl
Improving generalization of machine learning-identified biomarkers with causal modeling: an investigation into immune receptor diagnostics.
CoRR
Milena Pavlovic, Ghadi S. Al Hajj, Johan Pensar, Mollie Wood, Ludvig Magne Sollid, Victor Greiff, Geir Kjetil Sandve
2022 J jnl
Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery.
Briefings Bioinform.
Wiktoria Wilman, Sonia Wróbel, Weronika Bielska, Piotr Deszynski, Pawel Dudzic, Igor Jaszczyszyn, Jedrzej Kaniewski, Jakub Mlokosiewicz, Anahita Rouyan, Tadeusz Satlawa, Sandeep Kumar, Victor Greiff, Konrad Krawczyk
2022 J jnl
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.
Briefings Bioinform.
Shiva Dahal-Koirala, Gabriel Balaban, Ralf Stefan Neumann, Lonneke Scheffer, Knut Erik Aslaksen Lundin, Victor Greiff, Ludvig Magne Sollid, Shuo-Wang Qiao, Geir Kjetil Sandve
2022 J jnl
Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction.
Nat. Comput. Sci.
Philippe A. Robert, Rahmad Akbar, Robert Frank, Milena Pavlovic, Michael Widrich, Igor Snapkov, Andrei Slabodkin, Maria Chernigovskaya, Lonneke Scheffer, Eva Smorodina, Puneet Rawat, Brij Bhushan Mehta, Mai Ha Vu, Ingvild Frøberg Mathisen, Aurél Prósz, Krzysztof Abram, Alex Olar, Enkelejda Miho, Dag Trygve Truslew Haug, Fridtjof Lund-Johansen, Sepp Hochreiter, Ingrid Hobæk Haff, Günter Klambauer, Geir Kjetil Sandve, Victor Greiff
2021 J jnl
Modeling the Dynamics of T-Cell Development in the Thymus.
Entropy
Philippe A. Robert, Heike Kunze-Schumacher, Victor Greiff, Andreas Krueger
2021 J jnl
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.
Nat. Mach. Intell.
Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve
2020 J jnl
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.
Bioinform.
Erand Smakaj, Lmar Babrak, Mats Ohlin, Mikhail Shugay, Bryan S. Briney, Deniz Tosoni, Christopher Galli, Vendi Grobelsek, Igor D'Angelo, Branden J. Olson, Sai T. Reddy, Victor Greiff, Johannes Trück, Susanna Marquez, William D. Lees, Enkelejda Miho
2020 J jnl
Hopfield Networks is All You Need.
CoRR
Hubert Ramsauer, Bernhard Schäfl, Johannes Lehner, Philipp Seidl, Michael Widrich, Lukas Gruber, Markus Holzleitner, Milena Pavlovic, Geir Kjetil Sandve, Victor Greiff, David P. Kreil, Michael Kopp, Günter Klambauer, Johannes Brandstetter, Sepp Hochreiter
2020 A* conf
Modern Hopfield Networks and Attention for Immune Repertoire Classification.
NeurIPS
Michael Widrich, Bernhard Schäfl, Milena Pavlovic, Hubert Ramsauer, Lukas Gruber, Markus Holzleitner, Johannes Brandstetter, Geir Kjetil Sandve, Victor Greiff, Sepp Hochreiter, Günter Klambauer
2020 J jnl
Modern Hopfield Networks and Attention for Immune Repertoire Classification.
CoRR
Michael Widrich, Bernhard Schäfl, Hubert Ramsauer, Milena Pavlovic, Lukas Gruber, Markus Holzleitner, Johannes Brandstetter, Geir Kjetil Sandve, Victor Greiff, Sepp Hochreiter, Günter Klambauer
2020 J jnl
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.
Bioinform.
Cédric R. Weber, Rahmad Akbar, Alexander Yermanos, Milena Pavlovic, Igor Snapkov, Geir Kjetil Sandve, Sai T. Reddy, Victor Greiff
2017 J jnl
Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim).
Bioinform.
Alexander Yermanos, Victor Greiff, Nike Julia Krautler, Ulrike Menzel, Andreas Dounas, Enkelejda Miho, Annette Oxenius, Tanja Stadler, Sai T. Reddy