Vicente Acuña

21 papers B 2C 4Journal 14
YearRankTypeTitle / Venue / Authors
2026 J jnl
METACONE: A scalable framework for exploring the conversion cone of metabolic networks.
Comput. Biol. Chem.
Álvaro Altamirano, Ignacio Tapia, Vicente Acuña, Daniel Garrido, Pedro A. Saa
2021 J jnl
A family of tree-based generators for bubbles in directed graphs.
J. Graph Algorithms Appl.
Vicente Acuña, Leandro Ishi Soares de Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri
2020 C conf
A Family of Tree-Based Generators for Bubbles in Directed Graphs.
IWOCA
Vicente Acuña, Leandro Lima, Giuseppe F. Italiano, Luca Pepè Sciarria, Marie-France Sagot, Blerina Sinaimeri
2020 J jnl
On Bubble Generators in Directed Graphs.
Algorithmica
Vicente Acuña, Roberto Grossi, Giuseppe Francesco Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri
2017 B conf
On Bubble Generators in Directed Graphs.
WG
Vicente Acuña, Roberto Grossi, Giuseppe F. Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri
2016 J jnl
Deciphering transcriptional regulations coordinating the response to environmental changes.
BMC Bioinform.
Vicente Acuña, Andrés Aravena, Carito Guziolowski, Damien Eveillard, Anne Siegel, Alejandro Maass
2016 J jnl
Enumeration of minimal stoichiometric precursor sets in metabolic networks.
Algorithms Mol. Biol.
Ricardo Andrade, Martin Wannagat, Cecilia Coimbra Klein, Vicente Acuña, Alberto Marchetti-Spaccamela, Paulo Vieira Milreu, Leen Stougie, Marie-France Sagot
2014 B conf
Modeling Parsimonious Putative Regulatory Networks: Complexity and Heuristic Approach.
VMCAI
Vicente Acuña, Andrés Aravena, Alejandro Maass, Anne Siegel
2014 J jnl
Solving the maximum edge biclique packing problem on unbalanced bipartite graphs.
Discret. Appl. Math.
Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno
2014 J jnl
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure.
Bioinform.
Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot
2012 J jnl
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.
Bioinform.
Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot
2012 C conf
Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone.
ISCO
Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot
2012 J jnl
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets.
Theor. Comput. Sci.
Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie
2010 J jnl
A note on the complexity of finding and enumerating elementary modes.
Biosyst.
Vicente Acuña, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie
2010 C conf
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.
WABI
Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix
2010 J jnl
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts,
PLoS Comput. Biol.
Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Leen Stougie, Hubert Charles, Marie-France Sagot
2010 — —
Models and algorithms for metabolic networks: elementary modes and precursor sets.
Vicente Acuña
2010 J jnl
The biclique k-clustering problem in bipartite graphs and its application in bioinformatics.
Electron. Notes Discret. Math.
Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno
2009 J jnl
Modes and cuts in metabolic networks: Complexity and algorithms.
Biosyst.
Vicente Acuña, Flavio Chierichetti, Vincent Lacroix, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie
2008 C conf
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network.
WABI
Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie
2006 J jnl
Coding with variable block maps.
Theor. Comput. Sci.
Vicente Acuña, Gilles Didier, Alejandro Maass