Viacheslav Fofanov

11 papers B 1Misc 1Journal 8Unranked 1
YearRankTypeTitle / Venue / Authors
2018 J jnl
Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites.
BMC Bioinform.
Tara N. Furstenau, Jill H. Cocking, Jason W. Sahl, Viacheslav Fofanov
2010 J jnl
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.
BMC Bioinform.
Drew H. Bryant, Mark Moll, Brian Y. Chen, Viacheslav Fofanov, Lydia E. Kavraki
2009 J jnl
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.
Bioinform.
Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov
2008 J jnl
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.
BMC Bioinform.
David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge
2007 J jnl
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.
J. Bioinform. Comput. Biol.
Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2007 J jnl
Effect of the mutation rate and background size on the quality of pathogen identification.
Bioinform.
Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov
2007 — conf
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.
BIOCOMP
Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov
2007 J jnl
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.
J. Comput. Biol.
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2006 B conf
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.
RECOMB
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2005 Misc conf
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.
Pacific Symposium on Biocomputing
Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
2004 J jnl
How independent are the appearances of n-mers in different genomes?
Bioinform.
Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt