Valery Tkachenko

18 papers Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
J. Cheminformatics
Kamel Mansouri, José Teófilo Moreira-Filho, Charles N. Lowe, Nathaniel Charest, Todd M. Martin, Valery Tkachenko, Richard S. Judson, Mike Conway, Nicole C. Kleinstreuer, Antony J. Williams
2021 J jnl
CoRR
Kirill Karpov, Artem A. Mitrofanov, Vadim Korolev, Valery Tkachenko
2020 J jnl
J. Chem. Inf. Model.
Vadim Korolev, Artem A. Mitrofanov, Alexandru Korotcov, Valery Tkachenko
2019 J jnl
J. Cheminformatics
Kamel Mansouri, Neal F. Cariello, Alexandru Korotcov, Valery Tkachenko, Christopher M. Grulke, Catherine S. Sprankle, David G. Allen, Warren M. Casey, Nicole C. Kleinstreuer, Antony J. Williams
2016 J jnl
Database J. Biol. Databases Curation
Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William J. Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis V. Santana-Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko, John Torcivia-Rodriguez, Alin Voskanian, Quan Wan, Jing Wang, Tsung-Jung Wu, Carolyn Wilson, Raja Mazumder
2016 J jnl
J. Cheminformatics
Vincent F. Scalfani, Antony J. Williams, Valery Tkachenko, Karen Karapetyan, Alexey Pshenichnov, Robert M. Hanson, Jahred M. Liddie, Jason E. Bara
2015 J jnl
J. Chem. Inf. Model.
Aileen E. Day, Simon J. Coles, Colin L. Bird, Jeremy G. Frey, Richard J. Whitby, Valery Tkachenko, Antony J. Williams
2015 conf
SWAT4LS
Anna Gaulton, Lee Harland, Mark Davies, George Papadatos, Antonis Loizou, Nathan Dedman, Daniela Digles, Stian Soiland-Reyes, Valery Tkachenko, Stefan Senger, John P. Overington, Nick Lynch
2015 J jnl
J. Cheminformatics
Karen Karapetyan, Colin R. Batchelor, David Sharpe, Valery Tkachenko, Antony J. Williams
2014 conf
ISWC (1)
Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. A. Evelo, Anna Gaulton, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Lee Harland, Karen Karapetyan, Antonis Loizou, John P. Overington, Steve Pettifer, Jon Steele, Robert Stevens, Valery Tkachenko, Andra Waagmeester, Antony J. Williams, Egon L. Willighagen
2014 J jnl
J. Comput. Aided Mol. Des.
Antony J. Williams, Valery Tkachenko
2013 conf
ISWC (2)
Carole A. Goble, Alasdair J. G. Gray, Lee Harland, Karen Karapetyan, Antonis Loizou, Ivan Mikhailov, Yrjänä Rankka, Stefan Senger, Valery Tkachenko, Antony J. Williams, Egon L. Willighagen
2013 J jnl
J. Cheminformatics
Egon L. Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony J. Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David J. Wild
2011 J jnl
J. Comput. Aided Mol. Des.
Iurii Sushko, Sergii Novotarskyi, Robert Körner, Anil Kumar Pandey, Matthias Rupp, Wolfram Teetz, Stefan Brandmaier, Ahmed Abdelaziz, Volodymyr V. Prokopenko, Vsevolod Yu. Tanchuk, Roberto Todeschini, Alexandre Varnek, Gilles Marcou, Peter Ertl, Vladimir Potemkin, Maria A. Grishina, Johann Gasteiger, Christof H. Schwab, Igor I. Baskin, Vladimir A. Palyulin, Eugene V. Radchenko, William J. Welsh, Vladyslav V. Kholodovych, Dmitriy Chekmarev, Artem Cherkasov, João Aires-de-Sousa, Qing-You Zhang, Andreas Bender, Florian Nigsch, Luc Patiny, Antony J. Williams, Valery Tkachenko, Igor V. Tetko
2011 J jnl
J. Cheminformatics
Iurii Sushko, Anil Kumar Pandey, Sergii Novotarskyi, Robert Körner, Matthias Rupp, Wolfram Teetz, Stefan Brandmaier, Ahmed Abdelaziz, Volodymyr V. Prokopenko, Vsevolod Yu. Tanchuk, Roberto Todeschini, Alexandre Varnek, Gilles Marcou, Peter Ertl, Vladimir Potemkin, Maria A. Grishina, Johann Gasteiger, Igor I. Baskin, Vladimir A. Palyulin, Eugene V. Radchenko, William J. Welsh, Vladyslav V. Kholodovych, Dmitriy Chekmarev, Artem Cherkasov, João Aires-de-Sousa, Qing-You Zhang, Andreas Bender, Florian Nigsch, Luc Patiny, Antony J. Williams, Valery Tkachenko, Igor V. Tetko
2010 J jnl
J. Cheminformatics
Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors
2010 J jnl
J. Cheminformatics
Kristina M. Hettne, Antony J. Williams, Erik M. van Mulligen, Jos Kleinjans, Valery Tkachenko, Jan A. Kors
2010 J jnl
J. Cheminformatics
Antony J. Williams, Valery Tkachenko, Sergey Golotvin, Richard Kidd, Graham McCann
docker-build.sh
← Index docker-build.sh bash
#!/bin/bash

set -e

echo "Building REDB Docker image for linux/amd64 platform..."

# Function to tag the most recent <none> image
tag_unnamed_image() {
    local tag_name=$1
    local expected_size=$2
    
    # Get the most recent <none> image
    local image_id=$(docker images --filter "dangling=true" --format "{{.ID}}" | head -1)
    
    if [ -z "$image_id" ]; then
        echo "ERROR: No unnamed image found. Build may have failed."
        return 1
    fi
    
    local actual_size=$(docker images --format "table {{.ID}}\t{{.Size}}" | grep $image_id | awk '{print $2}')
    echo "Found image $image_id with size: $actual_size (expected: $expected_size)"
    
    # Tag the image
    echo "Tagging as $tag_name..."
    docker tag $image_id $tag_name
    
    return 0
}

# Build single unified image
echo ""
echo "Building REDB unified image - Supports both feature extraction and decompilation..."
echo "NOTE: If build hangs at 'exporting to image', press Ctrl+C - the image will still be created!"
echo ""

docker build --platform linux/amd64 -f Dockerfile -t redb:latest . || echo "Build interrupted (this is expected due to Docker Desktop bug)"

# Tag the image if it was built as unnamed
if docker images --filter "dangling=true" --format "{{.ID}}" | head -1 | grep -q "."; then
    tag_unnamed_image "redb:latest" "500MB"
fi

echo ""
echo "Docker build completed!"
echo ""
echo "Available images:"
docker images | grep redb

echo ""
echo "Image size:"
echo "REDB unified image: $(docker images redb:latest --format "{{.Size}}")"

echo ""
echo "Usage:"
echo "  Feature extraction: docker run redb:latest python3 start.py --nomad-job"
echo "  Decompilation:      docker run redb:latest python3 start.py --nomad-job --decompile"
echo "  Custom modules:     docker run redb:latest python3 start.py --nomad-job --modules BasicPropertiesExtractor,PEFeaturesExtractor"