Vahid Jalili

17 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
The Temporal Graph of Bitcoin Transactions.
CoRR
Vahid Jalili
2023 J jnl
Rescuing biologically relevant consensus regions across replicated samples.
BMC Bioinform.
Vahid Jalili, Marzia A. Cremona, Fernando Palluzzi
2022 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.
Nucleic Acids Res.
Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs
2021 J jnl
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.
PLoS Comput. Biol.
Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn A. Grüning, Jeremy Goecks
2020 J jnl
Cloud bursting galaxy: federated identity and access management.
Bioinform.
Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks
2020 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.
Nucleic Acids Res.
Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko
2019 J jnl
Next Generation Indexing for Genomic Intervals.
IEEE Trans. Knowl. Data Eng.
Vahid Jalili, Matteo Matteucci, Jeremy Goecks, Yashar Deldjoo, Stefano Ceri
2018 — conf
Federated Galaxy: Biomedical Computing at the Frontier.
IEEE CLOUD
Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks
2018 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
Nucleic Acids Res.
Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg
2018 J jnl
Using combined evidence from replicates to evaluate ChIP-seq peaks.
Bioinform.
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli
2017 J jnl
Explorative visual analytics on interval-based genomic data and their metadata.
BMC Bioinform.
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
2017 J jnl
Indexing Next-Generation Sequencing data.
Inf. Sci.
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
2017 J jnl
MuSERA: Multiple Sample Enriched Region Assessment.
Briefings Bioinform.
Vahid Jalili, Matteo Matteucci, Marco J. Morelli, Marco Masseroli
2017 J jnl
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes.
CoRR
Vahid Jalili
2016 — —
Efficient data structures for cross-samples inferences on genomic data.
Vahid Jalili
2015 J jnl
GenoMetric Query Language: a novel approach to large-scale genomic data management.
Bioinform.
Marco Masseroli, Pietro Pinoli, Francesco Venco, Abdulrahman Kaitoua, Vahid Jalili, Fernando Palluzzi, Heiko Müller, Stefano Ceri
2015 J jnl
Using combined evidence from replicates to evaluate ChIP-seq peaks.
Bioinform.
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli