Uygar Sümbül

23 papers A* 5Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Identifying Connectivity Distributions from Neural Dynamics Using Flows.
CoRR
Timothy Doyeon Kim, Ulises Pereira-Obilinovic, Yiliu Wang, Eric Shea-Brown, Uygar Sümbül
2025 A* conf
Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Function.
AAAI
Anna Grim, Jayaram Chandrashekar, Uygar Sümbül
2025 J jnl
Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Function.
CoRR
Anna Grim, Jayaram Chandrashekar, Uygar Sümbül
2025 J jnl
Interpretable time series analysis with Gumbel dynamics.
CoRR
Yiliu Wang, Timothy Doyeon Kim, Eric Shea-Brown, Uygar Sümbül
2025 A* conf
NetFormer: An interpretable model for recovering dynamical connectivity in neuronal population dynamics.
ICLR
Ziyu Lu, Wuwei Zhang, Trung Le, Hao Wang, Uygar Sümbül, Eric Todd Shea-Brown, Lu Mi
2025 J jnl
SPINT: Spatial Permutation-Invariant Neural Transformer for Consistent Intracortical Motor Decoding.
CoRR
Trung Le, Hao Fang, Jingyuan Li, Tung Nguyen, Lu Mi, Amy L. Orsborn, Uygar Sümbül, Eli Shlizerman
2024 J jnl
Author Correction: Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS.
Nat. Comput. Sci.
Yeganeh M. Marghi, Rohan Gala, Fahimeh Baftizadeh, Uygar Sümbül
2024 J jnl
Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS.
Nat. Comput. Sci.
Yeganeh M. Marghi, Rohan Gala, Fahimeh Baftizadeh, Uygar Sümbül
2024 J jnl
Publisher Correction: Joint inference of discrete cell types and continuous type-specific variability in single-cell datasets with MMIDAS.
Nat. Comput. Sci.
Yeganeh M. Marghi, Rohan Gala, Fahimeh Baftizadeh, Uygar Sümbül
2023 A* conf
Learning Time-Invariant Representations for Individual Neurons from Population Dynamics.
NeurIPS
Lu Mi, Trung Le, Tianxing He, Eli Shlizerman, Uygar Sümbül
2023 J jnl
Learning Time-Invariant Representations for Individual Neurons from Population Dynamics.
CoRR
Lu Mi, Trung Le, Tianxing He, Eli Shlizerman, Uygar Sümbül
2022 A* conf
Biologically-plausible backpropagation through arbitrary timespans via local neuromodulators.
NeurIPS
Yuhan Helena Liu, Stephen Smith, Stefan Mihalas, Eric Shea-Brown, Uygar Sümbül
2022 J jnl
Biologically-plausible backpropagation through arbitrary timespans via local neuromodulators.
CoRR
Yuhan Helena Liu, Stephen Smith, Stefan Mihalas, Eric Shea-Brown, Uygar Sümbül
2021 J jnl
Consistent cross-modal identification of cortical neurons with coupled autoencoders.
Nat. Comput. Sci.
Rohan Gala, Agata Budzillo, Fahimeh Baftizadeh, Jeremy A. Miller, Nathan W. Gouwens, Anton Arkhipov, Gabe Murphy, Bosiljka Tasic, Hongkui Zeng, Michael Hawrylycz, Uygar Sümbül
2020 J jnl
Joint Learning of Discrete and Continuous Variability with Coupled Autoencoding Agents.
CoRR
Yeganeh M. Marghi, Rohan Gala, Uygar Sümbül
2019 A* conf
A coupled autoencoder approach for multi-modal analysis of cell types.
NeurIPS
Rohan Gala, Nathan W. Gouwens, Zizhen Yao, Agata Budzillo, Osnat Penn, Bosiljka Tasic, Gabe Murphy, Hongkui Zeng, Uygar Sümbül
2019 J jnl
A coupled autoencoder approach for multi-modal analysis of cell types.
CoRR
Rohan Gala, Nathan W. Gouwens, Zizhen Yao, Agata Budzillo, Osnat Penn, Bosiljka Tasic, Gabe Murphy, Hongkui Zeng, Uygar Sümbül
2019 — conf
Reconstructing Neuronal Anatomy from Whole-Brain Images.
ISBI
James Gornet, Kannan Umadevi Venkataraju, Arun Narasimhan, Nicholas L. Turner, Kisuk Lee, H. Sebastian Seung, Pavel Osten, Uygar Sümbül
2019 J jnl
Reconstructing neuronal anatomy from whole-brain images.
CoRR
James Gornet, Kannan Umadevi Venkataraju, Arun Narasimhan, Nicholas L. Turner, Kisuk Lee, H. Sebastian Seung, Pavel Osten, Uygar Sümbül
2016 — conf
Automated scalable segmentation of neurons from multispectral images.
NIPS
Uygar Sümbül, Douglas H. Roossien, Dawen Cai, Fei Chen, Nicholas Barry, John P. Cunningham, Edward S. Boyden, Liam Paninski
2009 J jnl
A Practical Acceleration Algorithm for Real-Time Imaging.
IEEE Trans. Medical Imaging
Uygar Sümbül, Juan M. Santos, John M. Pauly
2009 J jnl
Improved Time Series Reconstruction for Dynamic Magnetic Resonance Imaging.
IEEE Trans. Medical Imaging
Uygar Sümbül, Juan M. Santos, John M. Pauly
2006 J jnl
Interpolating Between Periodicity and Discreteness Through the Fractional Fourier Transform.
IEEE Trans. Signal Process.
Haldun M. Özaktas, Uygar Sümbül