Ursula Pieper

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2015 J jnl
Prediction of Functionally Important Phospho-Regulatory Events in
PLoS Comput. Biol.
Jeffrey R. Johnson, Silvia D. Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo, Omar Wagih, Andrej Sali, Nevan J. Krogan, Pedro Beltrão
2014 J jnl
ModBase, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali
2013 J jnl
Target Prediction for an Open Access Set of Compounds Active against
PLoS Comput. Biol.
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom
2012 J jnl
SALIGN: a web server for alignment of multiple protein sequences and structures.
Bioinform.
Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan
2011 J jnl
ModBase, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali
2010 J jnl
Prediction of protease substrates using sequence and structure features.
Bioinform.
David T. Barkan, Daniel R. Hostetter, Sami Mahrus, Ursula Pieper, James A. Wells, Charles S. Craik, Andrej Sali
2009 J jnl
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali
2007 J jnl
DBAli tools: mining the protein structure space.
Nucleic Acids Res.
Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali
2007 J jnl
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
BMC Bioinform.
Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali
2006 J jnl
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
2005 J jnl
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.
Bioinform.
Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali
2004 J jnl
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali
2003 J jnl
ModView, visualization of multiple protein sequences and structures.
Bioinform.
Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali
2003 J jnl
Tools for comparative protein structure modeling and analysis.
Nucleic Acids Res.
Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali
2002 J jnl
MODBASE, a database of annotated comparative protein structure models.
Nucleic Acids Res.
Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali
2000 J jnl
MODBASE, a database of annotated comparative protein structure models.
Nucleic Acids Res.
Roberto Sánchez, Ursula Pieper, Nebojsa Mirkovic, Paul I. W. de Bakker, Edward Wittenstein, Andrej Sali