Urban Bren

16 papers C 1Journal 14Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Unveiling polyphenol-protein interactions: a comprehensive computational analysis.
J. Cheminformatics
Samo Lesnik, Marko Jukic, Urban Bren
2024 J jnl
The Effect of Microwaves on Protein Structure: Molecular Dynamics Approach.
J. Chem. Inf. Model.
Matic Broz, Chris Oostenbrink, Urban Bren
2023 J jnl
Fentanyl and the Fluorinated Fentanyl Derivative NFEPP Elicit Distinct Hydrogen-Bond Dynamics of the Opioid Receptor.
J. Chem. Inf. Model.
Samo Lesnik, Urban Bren, Tatiana Domratcheva, Ana-Nicoleta Bondar
2023 J jnl
Identifying Metal Binding Sites in Proteins Using Homologous Structures, the MADE Approach.
J. Chem. Inf. Model.
Vid Ravnik, Marko Jukic, Urban Bren
2022 J jnl
Conserved Water Networks Identification for Drug Design Using Density Clustering Approaches on Positional and Orientational Data.
J. Chem. Inf. Model.
Jelena Tosovic, Domagoj Fijan, Marko Jukic, Urban Bren
2021 — conf
Bioinformatic and MD Analysis of N501Y SARS-CoV-2 (UK) Variant.
ANTICOVID
Marko Jukic, Sebastjan Kralj, Natalia Nikitina, Urban Bren
2021 J jnl
CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs.
J. Chem. Inf. Model.
Thomas Giannos, Samo Lesnik, Urban Bren, Milan Hodoscek, Tatiana Domratcheva, Ana-Nicoleta Bondar
2020 J jnl
Potential Energy Function for Fentanyl-Based Opioid Pain Killers.
J. Chem. Inf. Model.
Samo Lesnik, Milan Hodoscek, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar
2019 J jnl
Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking.
J. Chem. Inf. Model.
Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc
2017 J jnl
BoBER: web interface to the base of bioisosterically exchangeable replacements.
J. Cheminformatics
Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic
2015 C conf
Carcinogenesis induced by Aflatoxin B1: A computational study.
BIBE
Tibor Kuna, Urban Bren
2014 J jnl
Pyranose Dehydrogenase Ligand Promiscuity: A Generalized Approach to Simulate Monosaccharide Solvation, Binding, and Product Formation.
PLoS Comput. Biol.
Michael M. H. Graf, Zhixiong Lin, Urban Bren, Dietmar Haltrich, Wilfred F. van Gunsteren, Chris Oostenbrink
2013 J jnl
Molecular dynamics simulations give insight into d-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase.
J. Comput. Aided Mol. Des.
Michael M. H. Graf, Urban Bren, Dietmar Haltrich, Chris Oostenbrink
2012 J jnl
Cytochrome P450 3A4 Inhibition by Ketoconazole: Tackling the Problem of Ligand Cooperativity Using Molecular Dynamics Simulations and Free-Energy Calculations.
J. Chem. Inf. Model.
Urban Bren, Chris Oostenbrink
2009 J jnl
Dynamic Behavior of Avian Influenza A Virus Neuraminidase Subtype H5N1 in Complex with Oseltamivir, Zanamivir, Peramivir, and Their Phosphonate Analogues.
J. Chem. Inf. Model.
Thanyarat Udommaneethanakit, Thanyada Rungrotmongkol, Urban Bren, Vladimir Frecer, Stanislav Miertus
2005 J jnl
Development and Validation of Empirical Force Field Parameters for Netropsin.
J. Chem. Inf. Model.
Urban Bren, Milan Hodoscek, Joze Koller